python ~/code/bedRPKMfromBAM.py L1024-Phaeodactylum_tricoturnum_ATAC_test.2x36mers.unique.nochrM-nochrC.dedup.MACS-2.1.0_peaks.narrowPeak 0 L1024-Phaeodactylum_tricoturnum_ATAC_test.2x36mers.unique.nochrM-nochrC.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/Ciliates/Tetrahymena_thermophila/Tetrahymena_thermophila.JCVI-TTA1-2.2.20+chrM.chrom.sizes L1024-Phaeodactylum_tricoturnum_ATAC_test.2x36mers.unique.nochrM-nochrC.dedup.MACS-2.1.0_peaks.narrowPeak.RPM -RPM -printSum -uniqueBAM