Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2018/2019-03-27-E.coli-Hi-C-check/juicer-SRR6376970 -d /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2018/2019-03-27-E.coli-Hi-C-check/juicer-SRR6376970 -p /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2//GCA_000005845.2_ASM584v2_genomic.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2//bwa-indexes/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Bacteria/Escherichia_coli_str._K-12_substr._MG1655-ASM584v2//bwa-indexes/GCA_000005845.2_ASM584v2_genomic.fa                                                                                                                                                          
Sequenced Read Pairs:  43,150,841
 Normal Paired: 36,228,817 (83.96%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 6,922,024 (16.04%)
 Ligation Motif Present: 37,892 (0.09%)
Alignable (Normal+Chimeric Paired): 36,228,817 (83.96%)
Unique Reads: 13,864,316 (32.13%)
PCR Duplicates: 22,364,501 (51.83%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 15,296,468
Intra-fragment Reads: 3,572,271 (8.28% / 25.77%)
Below MAPQ Threshold: 355,030 (0.82% / 2.56%)
Hi-C Contacts: 9,937,015 (23.03% / 71.67%)
 Ligation Motif Present: 12,936  (0.03% / 0.09%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 0  (0.00% / 0.00%)
Intra-chromosomal: 9,937,015  (23.03% / 71.67%)
Short Range (<20Kb): 7,824,674  (18.13% / 56.44%)
Long Range (>20Kb): 2,112,334  (4.90% / 15.24%)