## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Whi5-cln3-SCE-Rep1_S4.2x36mers.bt2.unique.nochrM.bam] OUTPUT=Whi5-cln3-SCE-Rep1_S4.2x36mers.bt2.unique.nochrM.dedup.bam METRICS_FILE=Whi5-cln3-SCE-Rep1_S4.2x36mers.bt2.unique.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 20 14:01:35 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	25066	2973050	39462	16576	259860	94663	0.089814	24107527

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.030903
2.0	1.942196
3.0	2.747759
4.0	3.459857
5.0	4.089336
6.0	4.64578
7.0	5.137664
8.0	5.572478
9.0	5.956843
10.0	6.296613
11.0	6.596962
12.0	6.862463
13.0	7.09716
14.0	7.304627
15.0	7.488023
16.0	7.65014
17.0	7.793448
18.0	7.920129
19.0	8.032113
20.0	8.131103
21.0	8.218608
22.0	8.295961
23.0	8.364339
24.0	8.424783
25.0	8.478215
26.0	8.525447
27.0	8.567199
28.0	8.604107
29.0	8.636733
30.0	8.665573
31.0	8.691068
32.0	8.713604
33.0	8.733526
34.0	8.751136
35.0	8.766703
36.0	8.780464
37.0	8.792628
38.0	8.803381
39.0	8.812886
40.0	8.821289
41.0	8.828716
42.0	8.835282
43.0	8.841086
44.0	8.846217
45.0	8.850752
46.0	8.854762
47.0	8.858306
48.0	8.861438
49.0	8.864208
50.0	8.866656
51.0	8.86882
52.0	8.870733
53.0	8.872424
54.0	8.873919
55.0	8.87524
56.0	8.876408
57.0	8.877441
58.0	8.878353
59.0	8.87916
60.0	8.879873
61.0	8.880504
62.0	8.881061
63.0	8.881554
64.0	8.881989
65.0	8.882374
66.0	8.882715
67.0	8.883015
68.0	8.883281
69.0	8.883516
70.0	8.883724
71.0	8.883908
72.0	8.88407
73.0	8.884214
74.0	8.884341
75.0	8.884453
76.0	8.884552
77.0	8.88464
78.0	8.884717
79.0	8.884786
80.0	8.884846
81.0	8.8849
82.0	8.884947
83.0	8.884989
84.0	8.885026
85.0	8.885058
86.0	8.885087
87.0	8.885113
88.0	8.885135
89.0	8.885155
90.0	8.885173
91.0	8.885189
92.0	8.885202
93.0	8.885215
94.0	8.885225
95.0	8.885235
96.0	8.885243
97.0	8.885251
98.0	8.885257
99.0	8.885263
100.0	8.885268