## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[WT-SCE-Rep1_S1.2x36mers.bt2.unique.nochrM.bam] OUTPUT=WT-SCE-Rep1_S1.2x36mers.bt2.unique.nochrM.dedup.bam METRICS_FILE=WT-SCE-Rep1_S1.2x36mers.bt2.unique.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 20 14:01:35 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	567	86518	1088	221	2754	1252	0.033001	2391697

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.01442
2.0	1.992799
3.0	2.936419
4.0	3.846513
5.0	4.724275
6.0	5.570851
7.0	6.38735
8.0	7.174841
9.0	7.934354
10.0	8.666883
11.0	9.373387
12.0	10.05479
13.0	10.711984
14.0	11.34583
15.0	11.957157
16.0	12.546764
17.0	13.115424
18.0	13.663881
19.0	14.192852
20.0	14.70303
21.0	15.195083
22.0	15.669654
23.0	16.127364
24.0	16.568813
25.0	16.994579
26.0	17.405218
27.0	17.801267
28.0	18.183246
29.0	18.551654
30.0	18.906973
31.0	19.249669
32.0	19.580189
33.0	19.898967
34.0	20.206419
35.0	20.502948
36.0	20.788942
37.0	21.064775
38.0	21.330809
39.0	21.587391
40.0	21.834857
41.0	22.073531
42.0	22.303725
43.0	22.525742
44.0	22.73987
45.0	22.946391
46.0	23.145575
47.0	23.337682
48.0	23.522964
49.0	23.701663
50.0	23.874014
51.0	24.040241
52.0	24.200563
53.0	24.355188
54.0	24.504321
55.0	24.648154
56.0	24.786878
57.0	24.920673
58.0	25.049715
59.0	25.174172
60.0	25.294208
61.0	25.409979
62.0	25.521636
63.0	25.629327
64.0	25.733192
65.0	25.833367
66.0	25.929982
67.0	26.023166
68.0	26.113038
69.0	26.199718
70.0	26.283318
71.0	26.363948
72.0	26.441713
73.0	26.516715
74.0	26.589053
75.0	26.658821
76.0	26.72611
77.0	26.791009
78.0	26.853601
79.0	26.91397
80.0	26.972195
81.0	27.02835
82.0	27.082511
83.0	27.134747
84.0	27.185127
85.0	27.233718
86.0	27.280582
87.0	27.325782
88.0	27.369375
89.0	27.41142
90.0	27.451971
91.0	27.491081
92.0	27.528801
93.0	27.565182
94.0	27.60027
95.0	27.634112
96.0	27.666751
97.0	27.69823
98.0	27.728591
99.0	27.757874
100.0	27.786116