Index of /kundaje/marinovg/oak/various/Stanford_bootcamp/2017/2026-03-17-DNA-sacCer3_Candida

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[TXT]MD5.txt2026-03-16 11:48 168  
[TXT]PEInsertDistFromBAM.sh2026-03-17 10:37 25K 
[   ]RPM-RPKM-files.tar.gz2026-03-17 12:44 201M 
[   ]SAMstats.2x36mers.ERMTOC.table2026-03-17 12:30 8.7K 
[   ]SAMstats.2x36mers.table2026-03-17 12:30 7.9K 
[   ]SAMstats.files2026-03-17 12:29 40K 
[   ]SAMstats.nochrM.1x36mers.table2026-03-17 12:30 8.4K 
[   ]SAMstats.nochrM.table2026-03-17 12:30 8.4K 
[TXT]SAMstats.sh2026-03-17 10:37 92K 
[   ]SAMstats.table2026-03-17 12:30 25K 
[   ]SAMstats.tar.gz2026-03-17 12:30 8.6K 
[   ]TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.2x36mers.unique.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.2x36mers.unique.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.Candida.RPKM.files2026-03-17 10:37 6.0K 
[   ]TSS-250bp-350bp.Candida.RPKM.table2026-03-17 12:43 2.5M 
[   ]TSS-250bp-350bp.Candida.RPM.files2026-03-17 10:37 6.0K 
[   ]TSS-250bp-350bp.Candida.RPM.table2026-03-17 12:43 2.5M 
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[   ]TSS-250bp-350bp.S_pombe.RPM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-03-17 10:37 6.5K 
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[   ]TSS-250bp-350bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-03-17 10:37 0  
[   ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 6.7K 
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[   ]TSS-250bp-350bp.sacCer3.RPKM.files2026-03-17 10:37 5.8K 
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[   ]TSS-250bp-350bp.sacCer3.RPM.files2026-03-17 10:37 5.7K 
[   ]TSS-250bp-350bp.sacCer3.RPM.table2026-03-17 12:43 3.1M 
[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2026-03-17 10:37 6.3K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 6.3K 
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[   ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2026-03-17 12:43 3.1M 
[   ]TSS-upstream500bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.2x36mers.unique.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.2x36mers.unique.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.Candida.RPKM.files2026-03-17 10:37 6.1K 
[   ]TSS-upstream500bp.Candida.RPKM.table2026-03-17 12:43 2.5M 
[   ]TSS-upstream500bp.Candida.RPM.files2026-03-17 10:37 6.1K 
[   ]TSS-upstream500bp.Candida.RPM.table2026-03-17 12:43 2.5M 
[   ]TSS-upstream500bp.S_pombe.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.S_pombe.RPM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-03-17 10:37 6.6K 
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[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-03-17 10:37 6.6K 
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[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 6.3K 
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[   ]TSS-upstream500bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-03-17 10:37 0  
[   ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-03-17 10:37 0  
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[   ]TSS-upstream500bp.sacCer3.RPKM.files2026-03-17 10:37 5.8K 
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[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-03-17 12:43 3.1M 
[   ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2026-03-17 10:37 6.1K 
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[DIR]X204SC25079262-Z01-F008/2026-03-17 10:00 -  
[TXT]bedRPKMfromBAM.sh2026-03-17 10:37 1.2M 
[TXT]columnrename.sh2026-03-17 10:37 24K 
[   ]commands.config2026-03-17 10:37 7.0K 
[TXT]countlines.sh2026-03-17 10:37 5.2K 
[   ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2026-03-17 12:42 1.2M 
[   ]cumulativeGeneProfiles.Candida.500bp.table2026-03-17 12:42 1.2M 
[   ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2026-03-17 12:44 2.4M 
[   ]cumulativeGeneProfiles.Candida.1000bp.table2026-03-17 12:43 2.4M 
[   ]cumulativeGeneProfiles.Candida.files2026-03-17 10:37 5.9K 
[   ]cumulativeGeneProfiles.S_pombe.500bp.smooth10.table2026-03-17 12:34 13K 
[   ]cumulativeGeneProfiles.S_pombe.500bp.table2026-03-17 12:38 13K 
[   ]cumulativeGeneProfiles.S_pombe.1000bp.smooth10.table2026-03-17 12:38 28K 
[   ]cumulativeGeneProfiles.S_pombe.1000bp.table2026-03-17 12:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.smooth10.table2026-03-17 12:37 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.table2026-03-17 12:34 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.smooth10.table2026-03-17 12:34 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.table2026-03-17 12:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.smooth10.table2026-03-17 12:36 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.table2026-03-17 12:36 13K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.smooth10.table2026-03-17 12:38 28K 
[   ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.table2026-03-17 12:34 28K 
[   ]cumulativeGeneProfiles.S_pombe.files2026-03-17 10:37 0  
[   ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.smooth10.table2026-03-17 12:34 13K 
[   ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.table2026-03-17 12:38 13K 
[   ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.smooth10.table2026-03-17 12:36 28K 
[   ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.table2026-03-17 12:36 28K 
[   ]cumulativeGeneProfiles.sacCer3-fullFragmentMidPoint.files2026-03-17 10:37 0  
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2026-03-17 12:41 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2026-03-17 12:43 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2026-03-17 12:41 2.4M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2026-03-17 12:40 2.4M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2026-03-17 12:39 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2026-03-17 12:39 1.2M 
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[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2026-03-17 12:40 2.3M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2026-03-17 12:41 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2026-03-17 12:39 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2026-03-17 12:42 2.4M 
[   ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2026-03-17 12:41 2.4M 
[   ]cumulativeGeneProfiles.sacCer3.files2026-03-17 10:37 5.0K 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2026-03-17 12:41 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2026-03-17 12:41 1.2M 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2026-03-17 12:40 2.4M 
[   ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2026-03-17 12:42 2.4M 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2026-03-17 12:39 404K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2026-03-17 12:35 393K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2026-03-17 12:38 876K 
[   ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2026-03-17 12:37 839K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2026-03-17 12:44 1.2M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2026-03-17 12:44 1.2M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2026-03-17 12:45 2.4M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2026-03-17 12:43 2.4M 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2026-03-17 10:37 5.9K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.smooth10.table2026-03-17 12:36 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.table2026-03-17 12:38 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.smooth10.table2026-03-17 12:36 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.table2026-03-17 12:38 28K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.smooth10.table2026-03-17 12:38 13K 
[   ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.table2026-03-17 12:36 13K 
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