Index of /kundaje/marinovg/oak/various/Stanford_bootcamp/2017/2026-02-07-DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]z2026-02-13 06:44 16K 
[TXT]wigtobigwig.sh2026-02-09 21:17 195K 
[TXT]signalAroundCoordinate.sh2026-02-09 21:17 252K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.table2026-02-13 06:39 618K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.tRNA.files2026-02-09 21:17 9.0K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.table2026-02-13 06:39 617K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snoRNA.files2026-02-09 21:17 9.1K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.table2026-02-13 06:39 617K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.snRNA.files2026-02-09 21:17 9.0K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.table2026-02-13 06:39 366K 
[ ]signalAround-TSS.with_multimappers.nochrM.unique.sacCer3.rRNA.RDN5.files2026-02-09 21:17 9.2K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.table2026-02-13 06:39 618K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.tRNA.files2026-02-09 21:17 9.1K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.table2026-02-13 06:39 618K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snoRNA.files2026-02-09 21:17 9.1K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.table2026-02-13 06:39 617K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.snRNA.files2026-02-09 21:17 9.1K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.table2026-02-13 06:39 520K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN5.files2026-02-09 21:17 9.3K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.tRNA.table2026-02-13 06:39 618K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.tRNA.files2026-02-09 21:17 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.snoRNA.table2026-02-13 06:39 618K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.snoRNA.files2026-02-09 21:17 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.snRNA.table2026-02-13 06:39 618K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.snRNA.files2026-02-09 21:17 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.rRNA.RDN5.table2026-02-13 06:39 442K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.rRNA.RDN5.files2026-02-09 21:17 10K 
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.S_pombe.tRNA.files2026-02-09 21:17 0  
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.S_pombe.snoRNA.files2026-02-09 21:17 0  
[ ]signalAround-TSS.with_multimappers.nochrM.ERMTOC.S_pombe.snRNA.files2026-02-09 21:17 0  
[ ]signalAround-TSS.tar.gz2026-02-13 06:40 3.1M 
[TXT]samtools-index.sh2026-02-09 21:17 28K 
[TXT]map.sh2026-02-09 21:17 79K 
[TXT]makewiggle.sh2026-02-09 21:17 179K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2026-02-13 05:59 4.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2026-02-09 21:17 9.1K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2026-02-13 05:59 4.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2026-02-09 21:17 9.1K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-13 05:59 4.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 9.4K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-13 05:59 4.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 9.5K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2026-02-13 06:00 3.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-09 21:17 9.8K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2026-02-13 06:00 3.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-09 21:17 9.9K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2026-02-13 05:59 3.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2026-02-09 21:17 9.4K 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2026-02-13 05:59 3.5M 
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2026-02-09 21:17 9.5K 
[ ]genes_500bp_ext.sacCer3.RPM.table2026-02-13 05:59 4.5M 
[ ]genes_500bp_ext.sacCer3.RPM.files2026-02-09 21:17 8.7K 
[ ]genes_500bp_ext.sacCer3.RPKM.table2026-02-13 05:59 4.5M 
[ ]genes_500bp_ext.sacCer3.RPKM.files2026-02-09 21:17 8.7K 
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-13 06:00 362K 
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 10K 
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-13 06:00 362K 
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 10K 
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-13 06:00 336K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 9.5K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-13 06:00 337K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 9.5K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2026-02-13 06:00 293K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-09 21:17 9.9K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2026-02-13 06:00 294K 
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-09 21:17 9.9K 
[ ]genes_500bp_ext.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.Candida.RPM.table2026-02-13 05:59 3.5M 
[ ]genes_500bp_ext.Candida.RPM.files2026-02-09 21:17 9.1K 
[ ]genes_500bp_ext.Candida.RPKM.table2026-02-13 05:59 3.5M 
[ ]genes_500bp_ext.Candida.RPKM.files2026-02-09 21:17 9.1K 
[ ]genes_500bp_ext.2x36mers.unique.sacCer3.RPM.files2026-02-09 21:17 0  
[ ]genes_500bp_ext.2x36mers.unique.sacCer3.RPKM.files2026-02-09 21:17 0  
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[ ]genes_500bp_ext.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 0  
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2026-02-13 05:59 4.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2026-02-09 21:17 8.6K 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2026-02-13 05:59 4.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2026-02-09 21:17 8.7K 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-13 05:59 4.4M 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 9.0K 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-13 05:59 4.4M 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 9.1K 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2026-02-13 06:00 3.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-09 21:17 9.4K 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2026-02-13 06:00 3.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-09 21:17 9.4K 
[ ]genes.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files2026-02-09 21:17 0  
[ ]genes.with_multimappers.nochrM.ERMTOC.S_pombe.RPKM.files2026-02-09 21:17 0  
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2026-02-13 05:59 3.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2026-02-09 21:17 9.0K 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2026-02-13 05:59 3.5M 
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2026-02-09 21:17 9.1K 
[ ]genes.sacCer3.RPM.table2026-02-13 05:59 4.5M 
[ ]genes.sacCer3.RPM.files2026-02-09 21:17 8.2K 
[ ]genes.sacCer3.RPKM.table2026-02-13 05:59 4.5M 
[ ]genes.sacCer3.RPKM.files2026-02-09 21:17 8.3K 
[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-13 06:00 2.9M 
[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-09 21:17 9.7K 
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[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-09 21:17 9.8K 
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[ ]genes.Candida.RPM.table2026-02-13 05:59 3.5M 
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[ ]genes.Candida.RPKM.table2026-02-13 05:59 3.5M 
[ ]genes.Candida.RPKM.files2026-02-09 21:17 8.7K 
[ ]genes.2x36mers.unique.sacCer3.RPM.files2026-02-09 21:17 0  
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[TXT]filterchrM.sh2026-02-09 21:17 31K 
[ ]datasets_stats.xls2026-02-13 06:43 436K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table2026-02-13 05:47 1.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table2026-02-13 05:49 1.4M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table2026-02-13 05:42 654K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table2026-02-13 05:43 702K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.table2026-02-13 05:52 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.1000bp.smooth10.table2026-02-13 05:54 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.table2026-02-13 05:55 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.protein_coding.500bp.smooth10.table2026-02-13 05:50 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2026-02-09 21:17 7.7K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2026-02-13 05:45 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2026-02-13 05:46 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2026-02-13 05:47 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2026-02-13 05:51 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2026-02-13 05:46 3.5M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2026-02-13 05:52 3.5M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2026-02-13 05:47 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2026-02-13 05:45 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.table2026-02-13 05:50 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.1000bp.smooth10.table2026-02-13 05:48 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.table2026-02-13 05:50 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.TIF-seq-updated.500bp.smooth10.table2026-02-13 05:47 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.table2026-02-13 05:45 1.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.smooth10.table2026-02-13 05:44 1.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.table2026-02-13 05:41 625K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.smooth10.table2026-02-13 05:43 654K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table2026-02-13 05:45 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table2026-02-13 05:52 3.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table2026-02-13 05:51 1.8M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table2026-02-13 05:46 1.8M 
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[ ]RPM-RPKM-files.tar.gz2026-02-13 06:01 299M 
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