python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L09_exp230501_A1_CJW7357_060min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L09_exp230501_A1_CJW7357_060min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L09_exp230501_A1_CJW7357_060min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L09_exp230501_A1_CJW7357_060min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L10_exp230501_A2_CJW7357_120min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L10_exp230501_A2_CJW7357_120min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L10_exp230501_A2_CJW7357_120min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L10_exp230501_A2_CJW7357_120min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L11_exp230501_A3_CJW7357_200min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L11_exp230501_A3_CJW7357_200min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L11_exp230501_A3_CJW7357_200min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L11_exp230501_A3_CJW7357_200min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L12_exp230501_A4_CJW7357_240min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L12_exp230501_A4_CJW7357_240min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L12_exp230501_A4_CJW7357_240min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L12_exp230501_A4_CJW7357_240min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L13_exp230502_B1_CJW7357_060min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L13_exp230502_B1_CJW7357_060min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L13_exp230502_B1_CJW7357_060min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L13_exp230502_B1_CJW7357_060min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L14_exp230502_B2_CJW7357_120min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L14_exp230502_B2_CJW7357_120min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L14_exp230502_B2_CJW7357_120min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L14_exp230502_B2_CJW7357_120min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L15_exp230502_B3_CJW7357_200min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L15_exp230502_B3_CJW7357_200min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L15_exp230502_B3_CJW7357_200min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L15_exp230502_B3_CJW7357_200min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L16_exp230502_B4_CJW7357_240min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.chrom.sizes 2023-07-04-MS230511L16_exp230502_B4_CJW7357_240min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-07-04-MS230511L16_exp230502_B4_CJW7357_240min-arrest_DNArep1.2x36mers.Escherichia_coli_str._K-12_substr._MG1655+Caulobacter_crescentus_NA1000.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Caulobacter_crescentus_NA1000.chrom.sizes 2023-07-04-MS230511L16_exp230502_B4_CJW7357_240min-arrest_DNArep1.2x36mers.Caulobacter_crescentus_NA1000.InsertLength