python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_00min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_05min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_00nMBE_10min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_00min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_05min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_05nMBE_10min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_00min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_05min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2021-11-12-exp210929_MS63_SCGElowURA_15nMBE_10min4TU_DNA2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength