python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B001_180525L01_exp180222_MS01_SCGE_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes B001_180525L01_exp180222_MS01_SCGE_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B001_180525L01_exp180222_MS01_SCGE_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes B001_180525L01_exp180222_MS01_SCGE_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B007_180525L04_exp180222_MS01_SCGE_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes B007_180525L04_exp180222_MS01_SCGE_AB01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B007_180525L04_exp180222_MS01_SCGE_AB01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes B007_180525L04_exp180222_MS01_SCGE_AB01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B013_180525L07_exp180222_MS01_SCGE_AB02.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes B013_180525L07_exp180222_MS01_SCGE_AB02.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B013_180525L07_exp180222_MS01_SCGE_AB02.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes B013_180525L07_exp180222_MS01_SCGE_AB02.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B019_180525L10_exp180222_MS01_SCGE_AB05.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes B019_180525L10_exp180222_MS01_SCGE_AB05.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B019_180525L10_exp180222_MS01_SCGE_AB05.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes B019_180525L10_exp180222_MS01_SCGE_AB05.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B025_180525L13_exp180222_MS01_SCGE_AB20.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes B025_180525L13_exp180222_MS01_SCGE_AB20.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py B025_180525L13_exp180222_MS01_SCGE_AB20.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes B025_180525L13_exp180222_MS01_SCGE_AB20.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength