python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L13_exp210422_MS207_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L14_exp210422_MS208_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L15_exp210422_MS299_SCD_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L16_exp210422_MS207_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L17_exp210422_MS208_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L18_exp210422_MS299_SCD_RAPA-40min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L19_exp210422_MS207_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L20_exp210422_MS208_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L21_exp210422_MS299_SCD_RAPA-60min_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L22_exp210422_MS207_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L23_exp210422_MS208_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.1x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.1x36mers.C_glabrata_CBS138_current_chromosomes.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.nochrM.chrom.sizes 2021-05-25-21508L24_exp210422_MS299_SCD_RAPA-24hr_DNA.2x36mers.C_glabrata_CBS138_current_chromosomes.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25