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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-H3-SC_ratio_0.25/F-20_S13_L001_R1_001.fastq.gz | wc -l > A002_180415LB_exp180227_MS1-MS99_ratio-0.25_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-H3-SC_ratio_0.5/E-20_S12_L001_R1_001.fastq.gz | wc -l > A003_180415LC_exp180227_MS1-MS99_ratio-0.50_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-H3-SC_ratio_1/D-20_S11_L001_R1_001.fastq.gz | wc -l > A004_180415LD_exp180227_MS1-MS99_ratio-1.00_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-H3-SC_ratio_2/C-20_S10_L001_R1_001.fastq.gz | wc -l > A005_180415LE_exp180227_MS1-MS99_ratio-2.00_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-H3-SC_ratio_4/B-20_S9_L001_R1_001.fastq.gz | wc -l > A006_180415LF_exp180227_MS1-MS99_ratio-4.00_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-H3-SC_ratio_16/A-20_S8_L001_R1_001.fastq.gz | wc -l > A007_180415LG_exp180227_MS1-MS99_ratio-16.0_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_0.0625/G-input_S7_L001_R1_001.fastq.gz | wc -l > A008_180415LA20_exp180227_MS1-MS99_ratio-0.0625_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_0.25/F-input_S6_L001_R1_001.fastq.gz | wc -l > A009_180415LB20_exp180227_MS1-MS99_ratio-0.25_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_0.5/E-input_S5_L001_R1_001.fastq.gz | wc -l > A010_180415LC20_exp180227_MS1-MS99_ratio-0.50_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_1/D-input_S4_L001_R1_001.fastq.gz | wc -l > A011_180415LD20_exp180227_MS1-MS99_ratio-1.00_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_2/C-input_S3_L001_R1_001.fastq.gz | wc -l > A012_180415LE20_exp180227_MS1-MS99_ratio-2.00_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_4/B-input_S2_L001_R1_001.fastq.gz | wc -l > A013_180415LF20_exp180227_MS1-MS99_ratio-4.00_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Input-SC_ratio_16/A-input_S1_L001_R1_001.fastq.gz | wc -l > A014_180415LG20_exp180227_MS1-MS99_ratio-16.0_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_0.0625/G-4_S28_L001_R1_001.fastq.gz | wc -l > A015_180415LA01_exp180227_MS1-MS99_ratio-0.0625_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_0.25/F-4_S27_L001_R1_001.fastq.gz | wc -l > A016_180415LB01_exp180227_MS1-MS99_ratio-0.25_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_0.5/E-4_S26_L001_R1_001.fastq.gz | wc -l > A017_180415LC01_exp180227_MS1-MS99_ratio-0.50_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_1/D-4_S25_L001_R1_001.fastq.gz | wc -l > A018_180415LD01_exp180227_MS1-MS99_ratio-1.00_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_2/C-4_S24_L001_R1_001.fastq.gz | wc -l > A019_180415LE01_exp180227_MS1-MS99_ratio-2.00_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_4/B-4_S23_L001_R1_001.fastq.gz | wc -l > A020_180415LF01_exp180227_MS1-MS99_ratio-4.00_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2pS2-SC_ratio_16/A-4_S22_L001_R1_001.fastq.gz | wc -l > A021_180415LG01_exp180227_MS1-MS99_ratio-16.0_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_0.0625/G-1_S21_L001_R1_001.fastq.gz | wc -l > A022_180415LA04_exp180227_MS1-MS99_ratio-0.0625_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_0.25/F-1_S20_L001_R1_001.fastq.gz | wc -l > A023_180415LB04_exp180227_MS1-MS99_ratio-0.25_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_0.5/E-1_S19_L001_R1_001.fastq.gz | wc -l > A024_180415LC04_exp180227_MS1-MS99_ratio-0.50_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_1/D-1_S18_L001_R1_001.fastq.gz | wc -l > A025_180415LD04_exp180227_MS1-MS99_ratio-1.00_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_2/C-1_S17_L001_R1_001.fastq.gz | wc -l > A026_180415LE04_exp180227_MS1-MS99_ratio-2.00_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_4/B-1_S16_L001_R1_001.fastq.gz | wc -l > A027_180415LF04_exp180227_MS1-MS99_ratio-4.00_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-04-20-Pol2-SC_ratio_16/A-1_S15_L001_R1_001.fastq.gz | wc -l > A028_180415LG04_exp180227_MS1-MS99_ratio-16.0_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_0min_+rap-Input-180522_L1/RNAPII_AA_0min_+rap-Input-180522_L1-GTCGATTG_S55_R1_001.fastq.gz | wc -l > A029_180522L01_exp180413_MS204_SCGE-RAPA-00min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_10min_+rap-Input-180522_L2/RNAPII_AA_10min_+rap-Input-180522_L2-TATGGCAC_S56_R1_001.fastq.gz | wc -l > A030_180522L02_exp180413_MS204_SCGE-RAPA-10min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_20min_+rap-Input-180522_L3/RNAPII_AA_20min_+rap-Input-180522_L3-CTCGAACA_S57_R1_001.fastq.gz | wc -l > A031_180522L03_exp180413_MS204_SCGE-RAPA-20min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_30min_+rap-Input-180522_L4/RNAPII_AA_30min_+rap-Input-180522_L4-CAACTCCA_S58_R1_001.fastq.gz | wc -l > A032_180522L04_exp180413_MS204_SCGE-RAPA-30min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_60min_+rap-Input-180522_L5/RNAPII_AA_60min_+rap-Input-180522_L5-GTCATCGT_S59_R1_001.fastq.gz | wc -l > A033_180522L05_exp180413_MS204_SCGE-RAPA-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_0min_+rap-Input-180522_L6/TBP_AA_0min_+rap-Input-180522_L6-GGACATCA_S60_R1_001.fastq.gz | wc -l > A034_180522L06_exp180413_MS205_SCGE-RAPA-00min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_10min_+rap-Input-180522_L7/TBP_AA_10min_+rap-Input-180522_L7-CAGGTTCA_S61_R1_001.fastq.gz | wc -l > A035_180522L07_exp180413_MS205_SCGE-RAPA-10min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_20min_+rap-Input-180522_L8/TBP_AA_20min_+rap-Input-180522_L8-GAACGAAG_S62_R1_001.fastq.gz | wc -l > A036_180522L08_exp180413_MS205_SCGE-RAPA-20min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_30min_+rap-Input-180522_L9/TBP_AA_30min_+rap-Input-180522_L9-CTCAGAAG_S63_R1_001.fastq.gz | wc -l > A037_180522L09_exp180413_MS205_SCGE-RAPA-30min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_60min_+rap-Input-180522_L10/TBP_AA_60min_+rap-Input-180522_L10-CATGAGCA_S64_R1_001.fastq.gz | wc -l > A038_180522L10_exp180413_MS205_SCGE-RAPA-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_0min_+rap-Pol2-180522_L11/RNAPII_AA_0min_+rap-Pol2-180522_L11-GACGAACT_S65_R1_001.fastq.gz | wc -l > A039_180522L11_exp180413_MS204_SCGE-RAPA-00min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_10min_+rap-Pol2-180522_L12/RNAPII_AA_10min_+rap-Pol2-180522_L12-AGACGCTA_S66_R1_001.fastq.gz | wc -l > A040_180522L12_exp180413_MS204_SCGE-RAPA-10min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_20min_+rap-Pol2-180522_L13/RNAPII_AA_20min_+rap-Pol2-180522_L13-ATAACGCC_S67_R1_001.fastq.gz | wc -l > A041_180522L13_exp180413_MS204_SCGE-RAPA-20min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_30min_+rap-Pol2-180522_L14/RNAPII_AA_30min_+rap-Pol2-180522_L14-GAATCACC_S68_R1_001.fastq.gz | wc -l > A042_180522L14_exp180413_MS204_SCGE-RAPA-30min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_60min_+rap-Pol2-180522_L15/RNAPII_AA_60min_+rap-Pol2-180522_L15-GGCAAGTT_S69_R1_001.fastq.gz | wc -l > A043_180522L15_exp180413_MS204_SCGE-RAPA-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_0min_+rap-Pol2-180522_L16/TBP_AA_0min_+rap-Pol2-180522_L16-GATCTTGC_S70_R1_001.fastq.gz | wc -l > A044_180522L16_exp180413_MS205_SCGE-RAPA-00min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_10min_+rap-Pol2-180522_L17/TBP_AA_10min_+rap-Pol2-180522_L17-CAATGCGA_S71_R1_001.fastq.gz | wc -l > A045_180522L17_exp180413_MS205_SCGE-RAPA-10min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_20min_+rap-Pol2-180522_L18/TBP_AA_20min_+rap-Pol2-180522_L18-GGTGTACA_S72_R1_001.fastq.gz | wc -l > A046_180522L18_exp180413_MS205_SCGE-RAPA-20min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_30min_+rap-Pol2-180522_L19/TBP_AA_30min_+rap-Pol2-180522_L19-TAGGAGCT_S73_R1_001.fastq.gz | wc -l > A047_180522L19_exp180413_MS205_SCGE-RAPA-30min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_60min_+rap-Pol2-180522_L20/TBP_AA_60min_+rap-Pol2-180522_L20-CGAATTGC_S74_R1_001.fastq.gz | wc -l > A048_180522L20_exp180413_MS205_SCGE-RAPA-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_0min_+rap-H3-180522_L21/RNAPII_AA_0min_+rap-H3-180522_L21-GTCCTAAG_S75_R1_001.fastq.gz | wc -l > A049_180522L21_exp180413_MS204_SCGE-RAPA-00min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_10min_+rap-H3-180522_L22/RNAPII_AA_10min_+rap-H3-180522_L22-CTTAGGAC_S76_R1_001.fastq.gz | wc -l > A050_180522L22_exp180413_MS204_SCGE-RAPA-10min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_20min_+rap-H3-180522_L23/RNAPII_AA_20min_+rap-H3-180522_L23-TCCACGTT_S77_R1_001.fastq.gz | wc -l > A051_180522L23_exp180413_MS204_SCGE-RAPA-20min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_30min_+rap-H3-180522_L24/RNAPII_AA_30min_+rap-H3-180522_L24-CAACACAG_S78_R1_001.fastq.gz | wc -l > A052_180522L24_exp180413_MS204_SCGE-RAPA-30min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-RNAPII_AA_60min_+rap-H3-180522_L25/RNAPII_AA_60min_+rap-H3-180522_L25-GCCTTAAC_S79_R1_001.fastq.gz | wc -l > A053_180522L25_exp180413_MS204_SCGE-RAPA-60min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_0min_+rap-H3-180522_L26/TBP_AA_0min_+rap-H3-180522_L26-GTAAGGTG_S80_R1_001.fastq.gz | wc -l > A054_180522L26_exp180413_MS205_SCGE-RAPA-00min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_10min_+rap-H3-180522_L27/TBP_AA_10min_+rap-H3-180522_L27-AGCTACCA_S81_R1_001.fastq.gz | wc -l > A055_180522L27_exp180413_MS205_SCGE-RAPA-10min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_20min_+rap-H3-180522_L28/TBP_AA_20min_+rap-H3-180522_L28-CTTCACTG_S82_R1_001.fastq.gz | wc -l > A056_180522L28_exp180413_MS205_SCGE-RAPA-20min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_30min_+rap-H3-180522_L29/TBP_AA_30min_+rap-H3-180522_L29-GGTTGAAC_S83_R1_001.fastq.gz | wc -l > A057_180522L29_exp180413_MS205_SCGE-RAPA-30min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-TBP_AA_60min_+rap-H3-180522_L30/TBP_AA_60min_+rap-H3-180522_L30-GATAGCCA_S84_R1_001.fastq.gz | wc -l > A058_180522L30_exp180413_MS205_SCGE-RAPA-60min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.1-Input-180531_L1/WT_OD_0.1-Input-180531_L1-CAGTGCTT_S31_R1_001.fastq.gz | wc -l > A059_180531L01_exp180524_MS1_SCGE_OD0.1_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.2-Input-180531_L2/WT_OD_0.2-Input-180531_L2-CTTGCTAG_S32_R1_001.fastq.gz | wc -l > A060_180531L02_exp180524_MS1_SCGE_OD0.2_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.3-Input-180531_L3/WT_OD_0.3-Input-180531_L3-TGGAAGCA_S33_R1_001.fastq.gz | wc -l > A061_180531L03_exp180524_MS1_SCGE_OD0.3_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.4-Input-180531_L4/WT_OD_0.4-Input-180531_L4-AGCTAAGC_S34_R1_001.fastq.gz | wc -l > A062_180531L04_exp180524_MS1_SCGE_OD0.4_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.5-Input-180531_L5/WT_OD_0.5-Input-180531_L5-GAACGGTT_S35_R1_001.fastq.gz | wc -l > A063_180531L05_exp180524_MS1_SCGE_OD0.5_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.6-Input-180531_L6/WT_OD_0.6-Input-180531_L6-GGAATGTC_S36_R1_001.fastq.gz | wc -l > A064_180531L06_exp180524_MS1_SCGE_OD0.6_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.1-Pol2-180531_L7/WT_OD_0.1-Pol2-180531_L7-TACGGTCT_S37_R1_001.fastq.gz | wc -l > A065_180531L07_exp180524_MS1_SCGE_OD0.1_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.2-Pol2-180531_L8/WT_OD_0.2-Pol2-180531_L8-CCAGTATC_S38_R1_001.fastq.gz | wc -l > A066_180531L08_exp180524_MS1_SCGE_OD0.2_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.3-Pol2-180531_L9/WT_OD_0.3-Pol2-180531_L9-TCTACGCA_S39_R1_001.fastq.gz | wc -l > A067_180531L09_exp180524_MS1_SCGE_OD0.3_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.4-Pol2-180531_L10/WT_OD_0.4-Pol2-180531_L10-GTAACCGA_S40_R1_001.fastq.gz | wc -l > A068_180531L10_exp180524_MS1_SCGE_OD0.4_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.5-Pol2-180531_L11/WT_OD_0.5-Pol2-180531_L11-GACGTCAT_S41_R1_001.fastq.gz | wc -l > A069_180531L11_exp180524_MS1_SCGE_OD0.5_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.6-Pol2-180531_L12/WT_OD_0.6-Pol2-180531_L12-CTTACAGC_S42_R1_001.fastq.gz | wc -l > A070_180531L12_exp180524_MS1_SCGE_OD0.6_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.1-RNAPII_pS2-180531_L13/WT_OD_0.1-RNAPII_pS2-180531_L13-TCCATTGC_S43_R1_001.fastq.gz | wc -l > A071_180531L13_exp180524_MS1_SCGE_OD0.1_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.2-RNAPII_pS2-180531_L14/WT_OD_0.2-RNAPII_pS2-180531_L14-AGCGAGAT_S44_R1_001.fastq.gz | wc -l > A072_180531L14_exp180524_MS1_SCGE_OD0.2_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.3-RNAPII_pS2-180531_L15/WT_OD_0.3-RNAPII_pS2-180531_L15-CAATAGCC_S45_R1_001.fastq.gz | wc -l > A073_180531L15_exp180524_MS1_SCGE_OD0.3_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.4-RNAPII_pS2-180531_L16/WT_OD_0.4-RNAPII_pS2-180531_L16-AAGACACC_S46_R1_001.fastq.gz | wc -l > A074_180531L16_exp180524_MS1_SCGE_OD0.4_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.5-RNAPII_pS2-180531_L17/WT_OD_0.5-RNAPII_pS2-180531_L17-CCAGTTGA_S47_R1_001.fastq.gz | wc -l > A075_180531L17_exp180524_MS1_SCGE_OD0.5_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.6-RNAPII_pS2-180531_L18/WT_OD_0.6-RNAPII_pS2-180531_L18-TGGTGAAG_S48_R1_001.fastq.gz | wc -l > A076_180531L18_exp180524_MS1_SCGE_OD0.6_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.1-H3-180531_L19/WT_OD_0.1-H3-180531_L19-AAGACCGT_S49_R1_001.fastq.gz | wc -l > A077_180531L19_exp180524_MS1_SCGE_OD0.1_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.2-H3-180531_L20/WT_OD_0.2-H3-180531_L20-TTGCGAGA_S50_R1_001.fastq.gz | wc -l > A078_180531L20_exp180524_MS1_SCGE_OD0.2_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.3-H3-180531_L21/WT_OD_0.3-H3-180531_L21-GCAATTCC_S51_R1_001.fastq.gz | wc -l > A079_180531L21_exp180524_MS1_SCGE_OD0.3_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.4-H3-180531_L22/WT_OD_0.4-H3-180531_L22-GAATCCGT_S52_R1_001.fastq.gz | wc -l > A080_180531L22_exp180524_MS1_SCGE_OD0.4_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.5-H3-180531_L23/WT_OD_0.5-H3-180531_L23-CCGCTTAA_S53_R1_001.fastq.gz | wc -l > A081_180531L23_exp180524_MS1_SCGE_OD0.5_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-WT_OD_0.6-H3-180531_L24/WT_OD_0.6-H3-180531_L24-TACCTGCA_S54_R1_001.fastq.gz | wc -l > A082_180531L24_exp180524_MS1_SCGE_OD0.6_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS80-Input-180525_L2/MS80-Input-180525_L2-AGTGACCT_S2_R1_001.fastq.gz | wc -l > B002_180525L02_exp180222_MS80_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS81-Input-180525_L3/MS81-Input-180525_L3-TCGGATTC_S3_R1_001.fastq.gz | wc -l > B003_180525L03_exp180222_MS81_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-0nM-Input-180529_L1/MS63-0nM-Input-180529_L1-AGACCTTG_S16_R1_001.fastq.gz | wc -l > B004_180529L01_exp180227_MS63_SCGE-00nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-10nM-Input-180529_L2/MS63-10nM-Input-180529_L2-AGGATAGC_S17_R1_001.fastq.gz | wc -l > B005_180529L02_exp180227_MS63_SCGE-10nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-30nM-Input-180529_L3/MS63-30nM-Input-180529_L3-CCTTCCAT_S18_R1_001.fastq.gz | wc -l > B006_180529L03_exp180227_MS63_SCGE-30nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS80-Pol2-180525_L5/MS80-Pol2-180525_L5-TCCTCATG_S5_R1_001.fastq.gz | wc -l > B008_180525L05_exp180222_MS80_SCGE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS81-Pol2-180525_L6/MS81-Pol2-180525_L6-GTCAGTCA_S6_R1_001.fastq.gz | wc -l > B009_180525L06_exp180222_MS81_SCGE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-0nM-Pol2-180529_L4/MS63-0nM-Pol2-180529_L4-GTCCTTGA_S19_R1_001.fastq.gz | wc -l > B010_180529L04_exp180227_MS63_SCGE-00nM-BE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-10nM-Pol2-180529_L5/MS63-10nM-Pol2-180529_L5-TGCGTAAC_S20_R1_001.fastq.gz | wc -l > B011_180529L05_exp180227_MS63_SCGE-10nM-BE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-30nM-Pol2-180529_L6/MS63-30nM-Pol2-180529_L6-CACAGACT_S21_R1_001.fastq.gz | wc -l > B012_180529L06_exp180227_MS63_SCGE-30nM-BE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS80-RNAPII_pS2-180525_L8/MS80-RNAPII_pS2-180525_L8-TCTAGGAG_S8_R1_001.fastq.gz | wc -l > B014_180525L08_exp180222_MS80_SCGE_AB02.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS81-RNAPII_pS2-180525_L9/MS81-RNAPII_pS2-180525_L9-CGCAACTA_S9_R1_001.fastq.gz | wc -l > B015_180525L09_exp180222_MS81_SCGE_AB02.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-0nM-RNAPII_pS2-180529_L7/MS63-0nM-RNAPII_pS2-180529_L7-TTACGTGC_S22_R1_001.fastq.gz | wc -l > B016_180529L07_exp180227_MS63_SCGE-00nM-BE_AB02.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-10nM-RNAPII_pS2-180529_L8/MS63-10nM-RNAPII_pS2-180529_L8-CCAAGGTT_S23_R1_001.fastq.gz | wc -l > B017_180529L08_exp180227_MS63_SCGE-10nM-BE_AB02.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-30nM-RNAPII_pS2-180529_L9/MS63-30nM-RNAPII_pS2-180529_L9-CACGCAAT_S24_R1_001.fastq.gz | wc -l > B018_180529L09_exp180227_MS63_SCGE-30nM-BE_AB02.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS80-RNAPII_pS5-180525_L11/MS80-RNAPII_pS5-180525_L11-GTACACCT_S11_R1_001.fastq.gz | wc -l > B020_180525L11_exp180222_MS80_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS81-RNAPII_pS5-180525_L12/MS81-RNAPII_pS5-180525_L12-CGGCATTA_S12_R1_001.fastq.gz | wc -l > B021_180525L12_exp180222_MS81_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-0nM-RNAPII_pS5-180529_L10/MS63-0nM-RNAPII_pS5-180529_L10-TTCCAGGT_S25_R1_001.fastq.gz | wc -l > B022_180529L10_exp180227_MS63_SCGE-00nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-10nM-RNAPII_pS5-180529_L11/MS63-10nM-RNAPII_pS5-180529_L11-TCATCTCC_S26_R1_001.fastq.gz | wc -l > B023_180529L11_exp180227_MS63_SCGE-10nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-30nM-RNAPII_pS5-180529_L12/MS63-30nM-RNAPII_pS5-180529_L12-GAGAGTAC_S27_R1_001.fastq.gz | wc -l > B024_180529L12_exp180227_MS63_SCGE-30nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS80-H3-180525_L14/MS80-H3-180525_L14-AGCCTATC_S14_R1_001.fastq.gz | wc -l > B026_180525L14_exp180222_MS80_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS81-H3-180525_L15/MS81-H3-180525_L15-CTGTACCA_S15_R1_001.fastq.gz | wc -l > B027_180525L15_exp180222_MS81_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-0nM-H3-180529_L13/MS63-0nM-H3-180529_L13-GTCGTTAC_S28_R1_001.fastq.gz | wc -l > B028_180529L13_exp180227_MS63_SCGE-00nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-10nM-H3-180529_L14/MS63-10nM-H3-180529_L14-GGAGGAAT_S29_R1_001.fastq.gz | wc -l > B029_180529L14_exp180227_MS63_SCGE-10nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-06-16-MS63-30nM-H3-180529_L15/MS63-30nM-H3-180529_L15-AGGAACAC_S30_R1_001.fastq.gz | wc -l > B030_180529L15_exp180227_MS63_SCGE-30nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L1-MS1-input/180718-L1-MS1-input-TTACCGAC_S1_R1_001.fastq.gz | wc -l > B031_180718L01_exp180222_MS01_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L6-MS80-input/180718-L6-MS80-input-GTCAGTCA_S6_R1_001.fastq.gz | wc -l > B032_180718L06_exp180222_MS80_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L11-MS81-input/180718-L11-MS81-input-GTACACCT_S11_R1_001.fastq.gz | wc -l > B033_180718L11_exp180222_MS81_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L16-MS63-0nM-input/180718-L16-MS63-0nM-input-AGACCTTG_S16_R1_001.fastq.gz | wc -l > B034_180718L16_exp180227_MS63_SCGE-00nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L21-MS63-10nM-input/180718-L21-MS63-10nM-input-CACAGACT_S21_R1_001.fastq.gz | wc -l > B035_180718L21_exp180227_MS63_SCGE-10nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L26-MS63-30nM-input/180718-L26-MS63-30nM-input-TCATCTCC_S26_R1_001.fastq.gz | wc -l > B036_180718L26_exp180227_MS63_SCGE-30nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L2-MS1-input-2/180718-L2-MS1-input-2-AGTGACCT_S2_R1_001.fastq.gz | wc -l > B037_180718L02_exp180222_MS01_SCGE_input-2.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L7-MS80-input-2/180718-L7-MS80-input-2-CGAATACG_S7_R1_001.fastq.gz | wc -l > B038_180718L07_exp180222_MS80_SCGE_input-2.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L12-MS81-input-2/180718-L12-MS81-input-2-CGGCATTA_S12_R1_001.fastq.gz | wc -l > B039_180718L12_exp180222_MS81_SCGE_input-2.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L17-MS63-0nM-input-2/180718-L17-MS63-0nM-input-2-AGGATAGC_S17_R1_001.fastq.gz | wc -l > B040_180718L17_exp180227_MS63_SCGE-00nM-BE_input-2.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L22-MS63-10nM-input-2/180718-L22-MS63-10nM-input-2-TTACGTGC_S22_R1_001.fastq.gz | wc -l > B041_180718L22_exp180227_MS63_SCGE-10nM-BE_input-2.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L27-MS63-30nM-input-2/180718-L27-MS63-30nM-input-2-GAGAGTAC_S27_R1_001.fastq.gz | wc -l > B042_180718L27_exp180227_MS63_SCGE-30nM-BE_input-2.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L3-MS1-AB5/180718-L3-MS1-AB5-TCGGATTC_S3_R1_001.fastq.gz | wc -l > B043_180718L03_exp180222_MS01_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L8-MS80-AB5/180718-L8-MS80-AB5-TCTAGGAG_S8_R1_001.fastq.gz | wc -l > B044_180718L08_exp180222_MS80_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L13-MS81-AB5/180718-L13-MS81-AB5-TCGTCTGA_S13_R1_001.fastq.gz | wc -l > B045_180718L13_exp180222_MS81_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L18-MS63-0nM-AB5/180718-L18-MS63-0nM-AB5-CCTTCCAT_S18_R1_001.fastq.gz | wc -l > B046_180718L18_exp180227_MS63_SCGE-00nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L23-MS63-10nM-AB5/180718-L23-MS63-10nM-AB5-CCAAGGTT_S23_R1_001.fastq.gz | wc -l > B047_180718L23_exp180227_MS63_SCGE-10nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L28-MS63-30nM-AB5/180718-L28-MS63-30nM-AB5-GTCGTTAC_S28_R1_001.fastq.gz | wc -l > B048_180718L28_exp180227_MS63_SCGE-30nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L4-MS1-AB20/180718-L4-MS1-AB20-CAAGGTAC_S4_R1_001.fastq.gz | wc -l > B049_180718L04_exp180222_MS01_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L9-MS80-AB20/180718-L9-MS80-AB20-CGCAACTA_S9_R1_001.fastq.gz | wc -l > B050_180718L09_exp180222_MS80_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L14-MS81-AB20/180718-L14-MS81-AB20-AGCCTATC_S14_R1_001.fastq.gz | wc -l > B051_180718L14_exp180222_MS81_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L19-MS63-0nM-AB20/180718-L19-MS63-0nM-AB20-GTCCTTGA_S19_R1_001.fastq.gz | wc -l > B052_180718L19_exp180227_MS63_SCGE-00nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L24-MS63-10nM-AB20/180718-L24-MS63-10nM-AB20-CACGCAAT_S24_R1_001.fastq.gz | wc -l > B053_180718L24_exp180227_MS63_SCGE-10nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L29-MS63-30nM-AB20/180718-L29-MS63-30nM-AB20-GGAGGAAT_S29_R1_001.fastq.gz | wc -l > B054_180718L29_exp180227_MS63_SCGE-30nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L5-MS1-AB21/180718-L5-MS1-AB21-TCCTCATG_S5_R1_001.fastq.gz | wc -l > B055_180718L05_exp180222_MS01_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L10-MS80-AB21/180718-L10-MS80-AB21-CGTATCTC_S10_R1_001.fastq.gz | wc -l > B056_180718L10_exp180222_MS80_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L15-MS81-AB21/180718-L15-MS81-AB21-CTGTACCA_S15_R1_001.fastq.gz | wc -l > B057_180718L15_exp180222_MS81_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L20-MS63-0nM-AB21/180718-L20-MS63-0nM-AB21-TGCGTAAC_S20_R1_001.fastq.gz | wc -l > B058_180718L20_exp180227_MS63_SCGE-00nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L25-MS63-10nM-AB21/180718-L25-MS63-10nM-AB21-TTCCAGGT_S25_R1_001.fastq.gz | wc -l > B059_180718L25_exp180227_MS63_SCGE-10nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180718-L30-MS63-30nM-AB21/180718-L30-MS63-30nM-AB21-AGGAACAC_S30_R1_001.fastq.gz | wc -l > B060_180718L30_exp180227_MS63_SCGE-30nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L1-MS1-input/180731-L1-MS1-input-AAGACCGT_S49_R1_001.fastq.gz | wc -l > B061_180731L01_exp180711_MS01_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L13-MS81-input/180731-L13-MS81-input-CAGGTTCA_S61_R1_001.fastq.gz | wc -l > B062_180731L13_exp180711_MS80_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L25-MS55-2-input/180731-L25-MS55-2-input-TAGGAGCT_S73_R1_001.fastq.gz | wc -l > B063_180731L25_exp180711_MS81_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L1-MS63-0nM-input1/180723-L1-MS63-0nM-input1-CAGTGCTT_S31_R1_001.fastq.gz | wc -l > B064_180723L01_exp180712_MS63_SCGE-00nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L7-MS63-10nM-input2/180723-L7-MS63-10nM-input2-TACGGTCT_S37_R1_001.fastq.gz | wc -l > B065_180723L07_exp180712_MS63_SCGE-10nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L13-MS63-30nM-input2/180723-L13-MS63-30nM-input2-TCCATTGC_S43_R1_001.fastq.gz | wc -l > B066_180723L13_exp180712_MS63_SCGE-30nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L2-MS1-AB1/180731-L2-MS1-AB1-TTGCGAGA_S50_R1_001.fastq.gz | wc -l > B067_180731L02_exp180711_MS01_SCGE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L14-MS81-AB1/180731-L14-MS81-AB1-GAACGAAG_S62_R1_001.fastq.gz | wc -l > B068_180731L14_exp180711_MS80_SCGE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L26-MS55-2-AB1/180731-L26-MS55-2-AB1-CGAATTGC_S74_R1_001.fastq.gz | wc -l > B069_180731L26_exp180711_MS81_SCGE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L2-MS63-0nM-AB1/180723-L2-MS63-0nM-AB1-CTTGCTAG_S32_R1_001.fastq.gz | wc -l > B070_180723L02_exp180712_MS63_SCGE-00nM-BE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L8-MS63-10nM-AB1/180723-L8-MS63-10nM-AB1-CCAGTATC_S38_R1_001.fastq.gz | wc -l > B071_180723L08_exp180712_MS63_SCGE-10nM-BE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L14-MS63-30nM-AB1/180723-L14-MS63-30nM-AB1-AGCGAGAT_S44_R1_001.fastq.gz | wc -l > B072_180723L14_exp180712_MS63_SCGE-30nM-BE_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L3-MS1-AB4/180731-L3-MS1-AB4-GCAATTCC_S51_R1_001.fastq.gz | wc -l > B073_180731L03_exp180711_MS01_SCGE_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L15-MS81-AB4/180731-L15-MS81-AB4-CTCAGAAG_S63_R1_001.fastq.gz | wc -l > B074_180731L15_exp180711_MS80_SCGE_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L27-MS55-2-AB4/180731-L27-MS55-2-AB4-GTCCTAAG_S75_R1_001.fastq.gz | wc -l > B075_180731L27_exp180711_MS81_SCGE_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L3-MS63-0nM-AB4/180723-L3-MS63-0nM-AB4-TGGAAGCA_S33_R1_001.fastq.gz | wc -l > B076_180723L03_exp180712_MS63_SCGE-00nM-BE_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L9-MS63-10nM-AB4/180723-L9-MS63-10nM-AB4-TCTACGCA_S39_R1_001.fastq.gz | wc -l > B077_180723L09_exp180712_MS63_SCGE-10nM-BE_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L15-MS63-30nM-AB4/180723-L15-MS63-30nM-AB4-CAATAGCC_S45_R1_001.fastq.gz | wc -l > B078_180723L15_exp180712_MS63_SCGE-30nM-BE_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L4-MS1-AB5/180731-L4-MS1-AB5-GAATCCGT_S52_R1_001.fastq.gz | wc -l > B079_180731L04_exp180711_MS01_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L10-MS80-AB5/180731-L10-MS80-AB5-CAACTCCA_S58_R1_001.fastq.gz | wc -l > B080_180731L10_exp180711_MS81_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L16-MS81-AB5/180731-L16-MS81-AB5-CATGAGCA_S64_R1_001.fastq.gz | wc -l > B081_180731L16_exp180711_MS80_SCGE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L4-MS63-0nM-AB5/180723-L4-MS63-0nM-AB5-AGCTAAGC_S34_R1_001.fastq.gz | wc -l > B082_180723L04_exp180712_MS63_SCGE-00nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L10-MS63-10nM-AB5/180723-L10-MS63-10nM-AB5-GTAACCGA_S40_R1_001.fastq.gz | wc -l > B083_180723L10_exp180712_MS63_SCGE-10nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L16-MS63-30nM-AB5/180723-L16-MS63-30nM-AB5-AAGACACC_S46_R1_001.fastq.gz | wc -l > B084_180723L16_exp180712_MS63_SCGE-30nM-BE_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L5-MS1-AB20/180731-L5-MS1-AB20-CCGCTTAA_S53_R1_001.fastq.gz | wc -l > B085_180731L05_exp180711_MS01_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L17-MS81-AB20/180731-L17-MS81-AB20-GACGAACT_S65_R1_001.fastq.gz | wc -l > B086_180731L17_exp180711_MS80_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L29-MS55-2-AB20/180731-L29-MS55-2-AB20-TCCACGTT_S77_R1_001.fastq.gz | wc -l > B087_180731L29_exp180711_MS81_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L5-MS63-0nM-AB20/180723-L5-MS63-0nM-AB20-GAACGGTT_S35_R1_001.fastq.gz | wc -l > B088_180723L05_exp180712_MS63_SCGE-00nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L11-MS63-10nM-AB20/180723-L11-MS63-10nM-AB20-GACGTCAT_S41_R1_001.fastq.gz | wc -l > B089_180723L11_exp180712_MS63_SCGE-10nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L17-MS63-30nM-AB20/180723-L17-MS63-30nM-AB20-CCAGTTGA_S47_R1_001.fastq.gz | wc -l > B090_180723L17_exp180712_MS63_SCGE-30nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L6-MS63-0nM-AB21/180723-L6-MS63-0nM-AB21-GGAATGTC_S36_R1_001.fastq.gz | wc -l > B091_180723L06_exp180712_MS63_SCGE-00nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L12-MS63-10nM-AB21/180723-L12-MS63-10nM-AB21-CTTACAGC_S42_R1_001.fastq.gz | wc -l > B092_180723L12_exp180712_MS63_SCGE-10nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180723-L18-MS63-30nM-AB21/180723-L18-MS63-30nM-AB21-TGGTGAAG_S48_R1_001.fastq.gz | wc -l > B093_180723L18_exp180712_MS63_SCGE-30nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L6-MS1-AB21/180731-L6-MS1-AB21-TACCTGCA_S54_R1_001.fastq.gz | wc -l > B094_180731L06_exp180711_MS01_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L18-MS81-AB21/180731-L18-MS81-AB21-AGACGCTA_S66_R1_001.fastq.gz | wc -l > B095_180731L18_exp180711_MS80_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L30-MS55-2-AB21/180731-L30-MS55-2-AB21-CAACACAG_S78_R1_001.fastq.gz | wc -l > B096_180731L30_exp180711_MS81_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L37-MS55-4-input/180731-L37-MS55-4-input-TACTCCAG_S85_R1_001.fastq.gz | wc -l > C001_180731L37_exp180709_MS55_SCGE_Fr1_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L7-MS80-input/180731-L7-MS80-input-GTCGATTG_S55_R1_001.fastq.gz | wc -l > C002_180731L07_exp180709_MS55_SCGE_Fr2_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L19-MS55-1-input/180731-L19-MS55-1-input-ATAACGCC_S67_R1_001.fastq.gz | wc -l > C003_180731L19_exp180709_MS55_SCGE_Fr3_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L31-MS55-3-input/180731-L31-MS55-3-input-GCCTTAAC_S79_R1_001.fastq.gz | wc -l > C004_180731L31_exp180709_MS55_SCGE_Fr4_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L38-MS55-4-AB1/180731-L38-MS55-4-AB1-GGAAGAGA_S86_R1_001.fastq.gz | wc -l > C005_180731L38_exp180709_MS55_SCGE_Fr1_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L8-MS80-AB1/180731-L8-MS80-AB1-TATGGCAC_S56_R1_001.fastq.gz | wc -l > C006_180731L08_exp180709_MS55_SCGE_Fr2_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L20-MS55-1-AB1/180731-L20-MS55-1-AB1-GAATCACC_S68_R1_001.fastq.gz | wc -l > C007_180731L20_exp180709_MS55_SCGE_Fr3_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L32-MS55-3-AB1/180731-L32-MS55-3-AB1-GTAAGGTG_S80_R1_001.fastq.gz | wc -l > C008_180731L32_exp180709_MS55_SCGE_Fr4_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L39-MS55-4-AB4/180731-L39-MS55-4-AB4-GCGTTAGA_S87_R1_001.fastq.gz | wc -l > C009_180731L39_exp180709_MS55_SCGE_Fr1_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L9-MS80-AB4/180731-L9-MS80-AB4-CTCGAACA_S57_R1_001.fastq.gz | wc -l > C010_180731L09_exp180709_MS55_SCGE_Fr2_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L21-MS55-1-AB4/180731-L21-MS55-1-AB4-GGCAAGTT_S69_R1_001.fastq.gz | wc -l > C011_180731L21_exp180709_MS55_SCGE_Fr3_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L33-MS55-3-AB4/180731-L33-MS55-3-AB4-AGCTACCA_S81_R1_001.fastq.gz | wc -l > C012_180731L33_exp180709_MS55_SCGE_Fr4_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L22-MS55-1-AB5/180731-L22-MS55-1-AB5-GATCTTGC_S70_R1_001.fastq.gz | wc -l > C013_180731L22_exp180709_MS55_SCGE_Fr1_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L28-MS55-2-AB5/180731-L28-MS55-2-AB5-CTTAGGAC_S76_R1_001.fastq.gz | wc -l > C014_180731L28_exp180709_MS55_SCGE_Fr2_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L34-MS55-3-AB5/180731-L34-MS55-3-AB5-CTTCACTG_S82_R1_001.fastq.gz | wc -l > C015_180731L34_exp180709_MS55_SCGE_Fr3_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L40-MS55-4-AB5/180731-L40-MS55-4-AB5-ATCTGACC_S88_R1_001.fastq.gz | wc -l > C016_180731L40_exp180709_MS55_SCGE_Fr4_AB05.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L41-MS55-4-AB20/180731-L41-MS55-4-AB20-AACCAGAG_S89_R1_001.fastq.gz | wc -l > C017_180731L41_exp180709_MS55_SCGE_Fr1_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L11-MS80-AB20/180731-L11-MS80-AB20-GTCATCGT_S59_R1_001.fastq.gz | wc -l > C018_180731L11_exp180709_MS55_SCGE_Fr2_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L23-MS55-1-AB20/180731-L23-MS55-1-AB20-CAATGCGA_S71_R1_001.fastq.gz | wc -l > C019_180731L23_exp180709_MS55_SCGE_Fr3_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L35-MS55-3-AB20/180731-L35-MS55-3-AB20-GGTTGAAC_S83_R1_001.fastq.gz | wc -l > C020_180731L35_exp180709_MS55_SCGE_Fr4_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L42-MS55-4-AB21/180731-L42-MS55-4-AB21-GTACCACA_S90_R1_001.fastq.gz | wc -l > C021_180731L42_exp180709_MS55_SCGE_Fr1_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L12-MS80-AB21/180731-L12-MS80-AB21-GGACATCA_S60_R1_001.fastq.gz | wc -l > C022_180731L12_exp180709_MS55_SCGE_Fr2_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L24-MS55-1-AB21/180731-L24-MS55-1-AB21-GGTGTACA_S72_R1_001.fastq.gz | wc -l > C023_180731L24_exp180709_MS55_SCGE_Fr3_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2018-09-13-180731-L36-MS55-3-AB21/180731-L36-MS55-3-AB21-GATAGCCA_S84_R1_001.fastq.gz | wc -l > C024_180731L36_exp180709_MS55_SCGE_Fr4_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L01_MS1_FrA_input/2020-02-21-200131L01_MS1_FrA_input.end1.fastq.gz | wc -l > C025_200131L01_MS1_SCGE_FrA_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L02_MS1_FrB_input/2020-02-21-200131L02_MS1_FrB_input.end1.fastq.gz | wc -l > C026_200131L02_MS1_SCGE_FrB_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L03_MS1_FrC_input/2020-02-21-200131L03_MS1_FrC_input.end1.fastq.gz | wc -l > C027_200131L03_MS1_SCGE_FrC_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L04_MS1_FrD_input/2020-02-21-200131L04_MS1_FrD_input.end1.fastq.gz | wc -l > C028_200131L04_MS1_SCGE_FrD_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L05_MS86_FrA_input/2020-02-21-200131L05_MS86_FrA_input.end1.fastq.gz | wc -l > C029_200131L05_MS86_SCGE_FrA_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L06_MS86_FrB_input/2020-02-21-200131L06_MS86_FrB_input.end1.fastq.gz | wc -l > C030_200131L06_MS86_SCGE_FrB_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L07_MS86_FrC_input/2020-02-21-200131L07_MS86_FrC_input.end1.fastq.gz | wc -l > C031_200131L07_MS86_SCGE_FrC_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L08_MS86_FrD_input/2020-02-21-200131L08_MS86_FrD_input.end1.fastq.gz | wc -l > C032_200131L08_MS86_SCGE_FrD_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L09_MS1_FrA_AB20/2020-02-21-200131L09_MS1_FrA_AB20.end1.fastq.gz | wc -l > C033_200131L09_MS1_SCGE_FrA_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L10_MS1_FrB_AB20/2020-02-21-200131L10_MS1_FrB_AB20.end1.fastq.gz | wc -l > C034_200131L10_MS1_SCGE_FrB_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L11_MS1_FrC_AB20/2020-02-21-200131L11_MS1_FrC_AB20.end1.fastq.gz | wc -l > C035_200131L11_MS1_SCGE_FrC_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L12_MS1_FrD_AB20/2020-02-21-200131L12_MS1_FrD_AB20.end1.fastq.gz | wc -l > C036_200131L12_MS1_SCGE_FrD_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L13_MS86_FrA_AB20/2020-02-21-200131L13_MS86_FrA_AB20.end1.fastq.gz | wc -l > C037_200131L13_MS86_SCGE_FrA_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L14_MS86_FrB_AB20/2020-02-21-200131L14_MS86_FrB_AB20.end1.fastq.gz | wc -l > C038_200131L14_MS86_SCGE_FrB_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L15_MS86_FrC_AB20/2020-02-21-200131L15_MS86_FrC_AB20.end1.fastq.gz | wc -l > C039_200131L15_MS86_SCGE_FrC_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L16_MS86_FrD_AB20/2020-02-21-200131L16_MS86_FrD_AB20.end1.fastq.gz | wc -l > C040_200131L16_MS86_SCGE_FrD_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L17_MS1_FrA_AB01/2020-02-21-200131L17_MS1_FrA_AB01.end1.fastq.gz | wc -l > C041_200131L17_MS1_SCGE_FrA_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L18_MS1_FrB_AB01/2020-02-21-200131L18_MS1_FrB_AB01.end1.fastq.gz | wc -l > C042_200131L18_MS1_SCGE_FrB_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L19_MS1_FrC_AB01/2020-02-21-200131L19_MS1_FrC_AB01.end1.fastq.gz | wc -l > C043_200131L19_MS1_SCGE_FrC_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L20_MS1_FrD_AB01/2020-02-21-200131L20_MS1_FrD_AB01.end1.fastq.gz | wc -l > C044_200131L20_MS1_SCGE_FrD_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L21_MS86_FrA_AB01/2020-02-21-200131L21_MS86_FrA_AB01.end1.fastq.gz | wc -l > C045_200131L21_MS86_SCGE_FrA_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L22_MS86_FrB_AB01/2020-02-21-200131L22_MS86_FrB_AB01.end1.fastq.gz | wc -l > C046_200131L22_MS86_SCGE_FrB_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L23_MS86_FrC_AB01/2020-02-21-200131L23_MS86_FrC_AB01.end1.fastq.gz | wc -l > C047_200131L23_MS86_SCGE_FrC_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200131L24_MS86_FrD_AB01/2020-02-21-200131L24_MS86_FrD_AB01.end1.fastq.gz | wc -l > C048_200131L24_MS86_SCGE_FrD_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L01_MS1_FrA_input/2020-06-18-200526L01_MS1_FrA_input.end1.fastq.gz | wc -l > C049_200526L01_MS1_SCGE_FrA_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L02_MS1_FrB_input/2020-06-18-200526L02_MS1_FrB_input.end1.fastq.gz | wc -l > C050_200526L02_MS1_SCGE_FrB_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L03_MS1_FrC_input/2020-06-18-200526L03_MS1_FrC_input.end1.fastq.gz | wc -l > C051_200526L03_MS1_SCGE_FrC_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L04_MS1_FrD_input/2020-06-18-200526L04_MS1_FrD_input.end1.fastq.gz | wc -l > C052_200526L04_MS1_SCGE_FrD_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L05_MS86_FrA_input/2020-06-18-200526L05_MS86_FrA_input.end1.fastq.gz | wc -l > C053_200526L05_MS86_SCGE_FrA_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L06_MS86_FrB_input/2020-06-18-200526L06_MS86_FrB_input.end1.fastq.gz | wc -l > C054_200526L06_MS86_SCGE_FrB_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L07_MS86_FrC_input/2020-06-18-200526L07_MS86_FrC_input.end1.fastq.gz | wc -l > C055_200526L07_MS86_SCGE_FrC_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L08_MS86_FrD_input/2020-06-18-200526L08_MS86_FrD_input.end1.fastq.gz | wc -l > C056_200526L08_MS86_SCGE_FrD_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L09_MS1_FrA_AB20/2020-06-18-200526L09_MS1_FrA_AB20.end1.fastq.gz | wc -l > C057_200526L09_MS1_SCGE_FrA_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L10_MS1_FrB_AB20/2020-06-18-200526L10_MS1_FrB_AB20.end1.fastq.gz | wc -l > C058_200526L10_MS1_SCGE_FrB_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L11_MS1_FrC_AB20/2020-06-18-200526L11_MS1_FrC_AB20.end1.fastq.gz | wc -l > C059_200526L11_MS1_SCGE_FrC_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L12_MS1_FrD_AB20/2020-06-18-200526L12_MS1_FrD_AB20.end1.fastq.gz | wc -l > C060_200526L12_MS1_SCGE_FrD_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L13_MS86_FrA_AB20/2020-06-18-200526L13_MS86_FrA_AB20.end1.fastq.gz | wc -l > C061_200526L13_MS86_SCGE_FrA_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L14_MS86_FrB_AB20/2020-06-18-200526L14_MS86_FrB_AB20.end1.fastq.gz | wc -l > C062_200526L14_MS86_SCGE_FrB_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L15_MS86_FrC_AB20/2020-06-18-200526L15_MS86_FrC_AB20.end1.fastq.gz | wc -l > C063_200526L15_MS86_SCGE_FrC_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L16_MS86_FrD_AB20/2020-06-18-200526L16_MS86_FrD_AB20.end1.fastq.gz | wc -l > C064_200526L16_MS86_SCGE_FrD_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L17_MS1_FrA_AB01/2020-06-18-200526L17_MS1_FrA_AB01.end1.fastq.gz | wc -l > C065_200526L17_MS1_SCGE_FrA_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L18_MS1_FrB_AB01/2020-06-18-200526L18_MS1_FrB_AB01.end1.fastq.gz | wc -l > C066_200526L18_MS1_SCGE_FrB_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L19_MS1_FrC_AB01/2020-06-18-200526L19_MS1_FrC_AB01.end1.fastq.gz | wc -l > C067_200526L19_MS1_SCGE_FrC_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L20_MS1_FrD_AB01/2020-06-18-200526L20_MS1_FrD_AB01.end1.fastq.gz | wc -l > C068_200526L20_MS1_SCGE_FrD_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L21_MS86_FrA_AB01/2020-06-18-200526L21_MS86_FrA_AB01.end1.fastq.gz | wc -l > C069_200526L21_MS86_SCGE_FrA_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L22_MS86_FrB_AB01/2020-06-18-200526L22_MS86_FrB_AB01.end1.fastq.gz | wc -l > C070_200526L22_MS86_SCGE_FrB_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L23_MS86_FrC_AB01/2020-06-18-200526L23_MS86_FrC_AB01.end1.fastq.gz | wc -l > C071_200526L23_MS86_SCGE_FrC_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L24_MS86_FrD_AB01/2020-06-18-200526L24_MS86_FrD_AB01.end1.fastq.gz | wc -l > C072_200526L24_MS86_SCGE_FrD_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L59_MS88_FrA_input/2019-10-07-190923L59_MS88_FrA_input.end1.fastq.gz | wc -l > C073_190923L59_exp190909_MS88_FrA_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L60_MS88_FrB_input/2019-10-07-190923L60_MS88_FrB_input.end1.fastq.gz | wc -l > C074_190923L60_exp190909_MS88_FrB_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L61_MS88_FrC_input/2019-10-07-190923L61_MS88_FrC_input.end1.fastq.gz | wc -l > C075_190923L61_exp190909_MS88_FrC_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L62_MS88_FrD_input/2019-10-07-190923L62_MS88_FrD_input.end1.fastq.gz | wc -l > C076_190923L62_exp190909_MS88_FrD_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L63_MS88_FrA_AB01-Rpb1/2019-10-07-190923L63_MS88_FrA_AB01-Rpb1.end1.fastq.gz | wc -l > C077_190923L63_exp190909_MS88_FrA_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L64_MS88_FrB_AB01-Rpb1/2019-10-07-190923L64_MS88_FrB_AB01-Rpb1.end1.fastq.gz | wc -l > C078_190923L64_exp190909_MS88_FrB_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L65_MS88_FrC_AB01-Rpb1/2019-10-07-190923L65_MS88_FrC_AB01-Rpb1.end1.fastq.gz | wc -l > C079_190923L65_exp190909_MS88_FrC_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L66_MS88_FrD_AB01-Rpb1/2019-10-07-190923L66_MS88_FrD_AB01-Rpb1.end1.fastq.gz | wc -l > C080_190923L66_exp190909_MS88_FrD_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L83_MS88_FrD_AB01-Rpb1_R/2019-10-07-190923L83_MS88_FrD_AB01-Rpb1_R.end1.fastq.gz | wc -l > C081_190923L83_exp190909_MS88_FrD_AB01_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L67_MS88_FrA_AB04-Rpb1S2P/2019-10-07-190923L67_MS88_FrA_AB04-Rpb1S2P.end1.fastq.gz | wc -l > C082_190923L67_exp190909_MS88_FrA_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L68_MS88_FrB_AB04-Rpb1S2P/2019-10-07-190923L68_MS88_FrB_AB04-Rpb1S2P.end1.fastq.gz | wc -l > C083_190923L68_exp190909_MS88_FrB_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L69_MS88_FrC_AB04-Rpb1S2P/2019-10-07-190923L69_MS88_FrC_AB04-Rpb1S2P.end1.fastq.gz | wc -l > C084_190923L69_exp190909_MS88_FrC_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L70_MS88_FrD_AB04-Rpb1S2P/2019-10-07-190923L70_MS88_FrD_AB04-Rpb1S2P.end1.fastq.gz | wc -l > C085_190923L70_exp190909_MS88_FrD_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L71_MS88_FrA_AB20-H3/2019-10-07-190923L71_MS88_FrA_AB20-H3.end1.fastq.gz | wc -l > C086_190923L71_exp190909_MS88_FrA_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L72_MS88_FrB_AB20-H3/2019-10-07-190923L72_MS88_FrB_AB20-H3.end1.fastq.gz | wc -l > C087_190923L72_exp190909_MS88_FrB_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L73_MS88_FrC_AB20-H3/2019-10-07-190923L73_MS88_FrC_AB20-H3.end1.fastq.gz | wc -l > C088_190923L73_exp190909_MS88_FrC_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L74_MS88_FrD_AB20-H3/2019-10-07-190923L74_MS88_FrD_AB20-H3.end1.fastq.gz | wc -l > C089_190923L74_exp190909_MS88_FrD_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L75_MS88_FrA_AB21-H4/2019-10-07-190923L75_MS88_FrA_AB21-H4.end1.fastq.gz | wc -l > C090_190923L75_exp190909_MS88_FrA_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L76_MS88_FrB_AB21-H4/2019-10-07-190923L76_MS88_FrB_AB21-H4.end1.fastq.gz | wc -l > C091_190923L76_exp190909_MS88_FrB_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L77_MS88_FrC_AB21-H4/2019-10-07-190923L77_MS88_FrC_AB21-H4.end1.fastq.gz | wc -l > C092_190923L77_exp190909_MS88_FrC_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L78_MS88_FrD_AB21-H4/2019-10-07-190923L78_MS88_FrD_AB21-H4.end1.fastq.gz | wc -l > C093_190923L78_exp190909_MS88_FrD_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L01_MS1_input-S01_A/181105L01_MS1_input-S01_A_1.fastq.gz | wc -l > D001_181105L01_exp180711_MS1_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L02_MS80_input-S02_A/181105L02_MS80_input-S02_A_1.fastq.gz | wc -l > D002_181105L02_exp180711_MS80_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L03_MS81_input-S03_A/181105L03_MS81_input-S03_A_1.fastq.gz | wc -l > D003_181105L03_exp180711_MS81_SCGE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L04_MS63_0nM_input-S04_A/181105L04_MS63_0nM_input-S04_A_1.fastq.gz | wc -l > D004_181105L04_exp180712_MS63_SCGE-0nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L05_MS63_10nM_input-S05_A/181105L05_MS63_10nM_input-S05_A_1.fastq.gz | wc -l > D005_181105L05_exp180712_MS63_SCGE-10nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L06_MS63_30nM_input-S06_A/181105L06_MS63_30nM_input-S06_A_1.fastq.gz | wc -l > D006_181105L06_exp180712_MS63_SCGE-30nM-BE_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L07_MS1_AB20-S07_A/181105L07_MS1_AB20-S07_A_1.fastq.gz | wc -l > D007_181105L07_exp180711_MS1_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L08_MS80_AB20-S08_A/181105L08_MS80_AB20-S08_A_1.fastq.gz | wc -l > D008_181105L08_exp180711_MS80_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L09_MS81_AB20-S09_A/181105L09_MS81_AB20-S09_A_1.fastq.gz | wc -l > D009_181105L09_exp180711_MS81_SCGE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L10_MS63_0nM_AB20-S10_A/181105L10_MS63_0nM_AB20-S10_A_1.fastq.gz | wc -l > D010_181105L10_exp180712_MS63_SCGE-0nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L11_MS63_10nM_AB20-S11_A/181105L11_MS63_10nM_AB20-S11_A_1.fastq.gz | wc -l > D011_181105L11_exp180712_MS63_SCGE-10nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L12_MS63_30nM_AB20-S12_A/181105L12_MS63_30nM_AB20-S12_A_1.fastq.gz | wc -l > D012_181105L12_exp180712_MS63_SCGE-30nM-BE_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L13_MS1_AB21-S13_A/181105L13_MS1_AB21-S13_A_1.fastq.gz | wc -l > D013_181105L13_exp180711_MS1_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L14_MS80_AB21-S14_A/181105L14_MS80_AB21-S14_A_1.fastq.gz | wc -l > D014_181105L14_exp180711_MS80_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L15_MS81_AB21-S15_A/181105L15_MS81_AB21-S15_A_1.fastq.gz | wc -l > D015_181105L15_exp180711_MS81_SCGE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L16_MS63_0nM_AB21-S16_A/181105L16_MS63_0nM_AB21-S16_A_1.fastq.gz | wc -l > D016_181105L16_exp180712_MS63_SCGE-0nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L17_MS63_10nM_AB21-S17_A/181105L17_MS63_10nM_AB21-S17_A_1.fastq.gz | wc -l > D017_181105L17_exp180712_MS63_SCGE-10nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L18_MS63_30nM_AB21-S18_A/181105L18_MS63_30nM_AB21-S18_A_1.fastq.gz | wc -l > D018_181105L18_exp180712_MS63_SCGE-30nM-BE_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L19_MS1_AB39-S19_A/181105L19_MS1_AB39-S19_A_1.fastq.gz | wc -l > D019_181105L19_exp180711_MS1_SCGE_AB39.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L20_MS80_AB39-S20_A/181105L20_MS80_AB39-S20_A_1.fastq.gz | wc -l > D020_181105L20_exp180711_MS80_SCGE_AB39.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L21_MS81_AB39-S21_A/181105L21_MS81_AB39-S21_A_1.fastq.gz | wc -l > D021_181105L21_exp180711_MS81_SCGE_AB39.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L22_MS63_0nM_AB39-S22_A/181105L22_MS63_0nM_AB39-S22_A_1.fastq.gz | wc -l > D022_181105L22_exp180712_MS63_SCGE-0nM-BE_AB39.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L23_MS63_10nM_AB39-S23_A/181105L23_MS63_10nM_AB39-S23_A_1.fastq.gz | wc -l > D023_181105L23_exp180712_MS63_SCGE-10nM-BE_AB39.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L24_MS63_30nM_AB39-S24_A/181105L24_MS63_30nM_AB39-S24_A_1.fastq.gz | wc -l > D024_181105L24_exp180712_MS63_SCGE-30nM-BE_AB39.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L25_MS1_AB41-S25_A/181105L25_MS1_AB41-S25_A_1.fastq.gz | wc -l > D025_181105L25_exp180711_MS1_SCGE_AB41.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L26_MS80_AB41-S26_A/181105L26_MS80_AB41-S26_A_1.fastq.gz | wc -l > D026_181105L26_exp180711_MS80_SCGE_AB41.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L27_MS81_AB41-S27_A/181105L27_MS81_AB41-S27_A_1.fastq.gz | wc -l > D027_181105L27_exp180711_MS81_SCGE_AB42.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L28_MS63_0nM_AB41-S28_A/181105L28_MS63_0nM_AB41-S28_A_1.fastq.gz | wc -l > D028_181105L28_exp180712_MS63_SCGE-0nM-BE_AB41.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L29_MS63_10nM_AB41-S29_A/181105L29_MS63_10nM_AB41-S29_A_1.fastq.gz | wc -l > D029_181105L29_exp180712_MS63_SCGE-10nM-BE_AB41.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L30_MS63_30nM_AB41-S30_A/181105L30_MS63_30nM_AB41-S30_A_1.fastq.gz | wc -l > D030_181105L30_exp180712_MS63_SCGE-30nM-BE_AB41.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L31_MS1_AB42-S31_A/181105L31_MS1_AB42-S31_A_1.fastq.gz | wc -l > D031_181105L31_exp180711_MS1_SCGE_AB42.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L32_MS80_AB42-S32_A/181105L32_MS80_AB42-S32_A_1.fastq.gz | wc -l > D032_181105L32_exp180711_MS80_SCGE_AB42.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L33_MS81_AB42-S33_A/181105L33_MS81_AB42-S33_A_1.fastq.gz | wc -l > D033_181105L33_exp180711_MS81_SCGE_AB41.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L34_MS63_0nM_AB42-S34_A/181105L34_MS63_0nM_AB42-S34_A_1.fastq.gz | wc -l > D034_181105L34_exp180712_MS63_SCGE-0nM-BE_AB42.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L35_MS63_10nM_AB42-S35_A/181105L35_MS63_10nM_AB42-S35_A_1.fastq.gz | wc -l > D035_181105L35_exp180712_MS63_SCGE-10nM-BE_AB42.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L36_MS63_30nM_AB42-S36_A/181105L36_MS63_30nM_AB42-S36_A_1.fastq.gz | wc -l > D036_181105L36_exp180712_MS63_SCGE-30nM-BE_AB42.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L37_MS1_AB43-S37_A/181105L37_MS1_AB43-S37_A_1.fastq.gz | wc -l > D037_181105L37_exp180711_MS1_SCGE_AB43.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L38_MS80_AB43-S38_A/181105L38_MS80_AB43-S38_A_1.fastq.gz | wc -l > D038_181105L38_exp180711_MS80_SCGE_AB43.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L39_MS81_AB43-S39_A/181105L39_MS81_AB43-S39_A_1.fastq.gz | wc -l > D039_181105L39_exp180711_MS81_SCGE_AB43.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L40_MS63_0nM_AB43-S40_A/181105L40_MS63_0nM_AB43-S40_A_1.fastq.gz | wc -l > D040_181105L40_exp180712_MS63_SCGE-0nM-BE_AB43.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L41_MS63_10nM_AB43-S41_A/181105L41_MS63_10nM_AB43-S41_A_1.fastq.gz | wc -l > D041_181105L41_exp180712_MS63_SCGE-10nM-BE_AB43.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L42_MS63_30nM_AB43-S42_A/181105L42_MS63_30nM_AB43-S42_A_1.fastq.gz | wc -l > D042_181105L42_exp180712_MS63_SCGE-30nM-BE_AB43.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L43_MS1_AB44-S43_A/181105L43_MS1_AB44-S43_A_1.fastq.gz | wc -l > D043_181105L43_exp180711_MS1_SCGE_AB44.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L44_MS80_AB44-S44_A/181105L44_MS80_AB44-S44_A_1.fastq.gz | wc -l > D044_181105L44_exp180711_MS80_SCGE_AB44.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L45_MS81_AB44-S45_A/181105L45_MS81_AB44-S45_A_1.fastq.gz | wc -l > D045_181105L45_exp180711_MS81_SCGE_AB44.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L46_MS63_0nM_AB44-S46_A/181105L46_MS63_0nM_AB44-S46_A_1.fastq.gz | wc -l > D046_181105L46_exp180712_MS63_SCGE-0nM-BE_AB44.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L47_MS63_10nM_AB44-S47_A/181105L47_MS63_10nM_AB44-S47_A_1.fastq.gz | wc -l > D047_181105L47_exp180712_MS63_SCGE-10nM-BE_AB44.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L48_MS63_30nM_AB44-S48_A/181105L48_MS63_30nM_AB44-S48_A_1.fastq.gz | wc -l > D048_181105L48_exp180712_MS63_SCGE-30nM-BE_AB44.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L49_MS1_AB45-S49_A/181105L49_MS1_AB45-S49_A_1.fastq.gz | wc -l > D049_181105L49_exp180711_MS1_SCGE_AB45.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L50_MS80_AB45-S50_A/181105L50_MS80_AB45-S50_A_1.fastq.gz | wc -l > D050_181105L50_exp180711_MS80_SCGE_AB45.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L51_MS81_AB45-S51_A/181105L51_MS81_AB45-S51_A_1.fastq.gz | wc -l > D051_181105L51_exp180711_MS81_SCGE_AB45.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L52_MS63_0nM_AB45-S52_A/181105L52_MS63_0nM_AB45-S52_A_1.fastq.gz | wc -l > D052_181105L52_exp180712_MS63_SCGE-0nM-BE_AB45.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L53_MS63_10nM_AB45-S53_A/181105L53_MS63_10nM_AB45-S53_A_1.fastq.gz | wc -l > D053_181105L53_exp180712_MS63_SCGE-10nM-BE_AB45.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L54_MS63_30nM_AB45-S54_A/181105L54_MS63_30nM_AB45-S54_A_1.fastq.gz | wc -l > D054_181105L54_exp180712_MS63_SCGE-30nM-BE_AB45.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L55_MS1_AB46-S55_A/181105L55_MS1_AB46-S55_A_1.fastq.gz | wc -l > D055_181105L55_exp180711_MS1_SCGE_AB46.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L56_MS80_AB46-S56_A/181105L56_MS80_AB46-S56_A_1.fastq.gz | wc -l > D056_181105L56_exp180711_MS80_SCGE_AB46.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L57_MS81_AB46-S57_A/181105L57_MS81_AB46-S57_A_1.fastq.gz | wc -l > D057_181105L57_exp180711_MS81_SCGE_AB46.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L58_MS63_0nM_AB46-S58_A/181105L58_MS63_0nM_AB46-S58_A_1.fastq.gz | wc -l > D058_181105L58_exp180712_MS63_SCGE-0nM-BE_AB46.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L59_MS63_10nM_AB46-S59_A/181105L59_MS63_10nM_AB46-S59_A_1.fastq.gz | wc -l > D059_181105L59_exp180712_MS63_SCGE-10nM-BE_AB46.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L60_MS63_30nM_AB46-S60_A/181105L60_MS63_30nM_AB46-S60_A_1.fastq.gz | wc -l > D060_181105L60_exp180712_MS63_SCGE-30nM-BE_AB46.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L61_MS1_AB47-S61_A/181105L61_MS1_AB47-S61_A_1.fastq.gz | wc -l > D061_181105L61_exp180711_MS1_SCGE_AB47.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L62_MS80_AB47-S62_A/181105L62_MS80_AB47-S62_A_1.fastq.gz | wc -l > D062_181105L62_exp180711_MS80_SCGE_AB47.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L63_MS81_AB47-S63_A/181105L63_MS81_AB47-S63_A_1.fastq.gz | wc -l > D063_181105L63_exp180711_MS81_SCGE_AB47.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L64_MS63_0nM_AB47-S64_A/181105L64_MS63_0nM_AB47-S64_A_1.fastq.gz | wc -l > D064_181105L64_exp180712_MS63_SCGE-0nM-BE_AB47.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L65_MS63_10nM_AB47-S65_A/181105L65_MS63_10nM_AB47-S65_A_1.fastq.gz | wc -l > D065_181105L65_exp180712_MS63_SCGE-10nM-BE_AB47.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L66_MS63_30nM_AB47-S66_A/181105L66_MS63_30nM_AB47-S66_A_1.fastq.gz | wc -l > D066_181105L66_exp180712_MS63_SCGE-30nM-BE_AB47.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L67_MS1_AB48-S67_A/181105L67_MS1_AB48-S67_A_1.fastq.gz | wc -l > D067_181105L67_exp180711_MS1_SCGE_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L68_MS80_AB48-S68_A/181105L68_MS80_AB48-S68_A_1.fastq.gz | wc -l > D068_181105L68_exp180711_MS80_SCGE_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L69_MS81_AB48-S69_A/181105L69_MS81_AB48-S69_A_1.fastq.gz | wc -l > D069_181105L69_exp180711_MS81_SCGE_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L70_MS63_0nM_AB48-S70_A/181105L70_MS63_0nM_AB48-S70_A_1.fastq.gz | wc -l > D070_181105L70_exp180712_MS63_SCGE-0nM-BE_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L71_MS63_10nM_AB48-S71_A/181105L71_MS63_10nM_AB48-S71_A_1.fastq.gz | wc -l > D071_181105L71_exp180712_MS63_SCGE-10nM-BE_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-01-03-181105L72_MS63_30nM_AB48-S72_A/181105L72_MS63_30nM_AB48-S72_A_1.fastq.gz | wc -l > D072_181105L72_exp180712_MS63_SCGE-30nM-BE_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L63_exp200101_MS207_input/2020-03-16-200224L63_exp200101_MS207_input.end1.fastq.gz | wc -l > E001_200224L63_exp200101_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L64_exp200101_MS289_input/2020-03-16-200224L64_exp200101_MS289_input.end1.fastq.gz | wc -l > E002_200224L64_exp200101_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L65_exp200101_MS281_input/2020-03-16-200224L65_exp200101_MS281_input.end1.fastq.gz | wc -l > E003_200224L65_exp200101_MS281_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L66_exp200101_MS283_input/2020-03-16-200224L66_exp200101_MS283_input.end1.fastq.gz | wc -l > E004_200224L66_exp200101_MS283_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L67_exp200101_MS285_input/2020-03-16-200224L67_exp200101_MS285_input.end1.fastq.gz | wc -l > E005_200224L67_exp200101_MS285_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L68_exp200101_MS287_input/2020-03-16-200224L68_exp200101_MS287_input.end1.fastq.gz | wc -l > E006_200224L68_exp200101_MS287_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L69_exp200101_MS207_input/2020-03-16-200224L69_exp200101_MS207_input.end1.fastq.gz | wc -l > E007_200224L69_exp200101_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L70_exp200101_MS289_input/2020-03-16-200224L70_exp200101_MS289_input.end1.fastq.gz | wc -l > E008_200224L70_exp200101_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L71_exp200101_MS282_input/2020-03-16-200224L71_exp200101_MS282_input.end1.fastq.gz | wc -l > E009_200224L71_exp200101_MS282_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L72_exp200101_MS284_input/2020-03-16-200224L72_exp200101_MS284_input.end1.fastq.gz | wc -l > E010_200224L72_exp200101_MS284_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L73_exp200101_MS286_input/2020-03-16-200224L73_exp200101_MS286_input.end1.fastq.gz | wc -l > E011_200224L73_exp200101_MS286_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L74_exp200101_MS288_input/2020-03-16-200224L74_exp200101_MS288_input.end1.fastq.gz | wc -l > E012_200224L74_exp200101_MS288_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L25_MS207_AB01/2020-02-21-200201L25_MS207_AB01.end1.fastq.gz | wc -l > E013_200201L25_exp200101_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L26_MS289_AB01/2020-02-21-200201L26_MS289_AB01.end1.fastq.gz | wc -l > E014_200201L26_exp200101_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L27_MS281_AB01/2020-02-21-200201L27_MS281_AB01.end1.fastq.gz | wc -l > E015_200201L27_exp200101_MS281_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L28_MS283_AB01/2020-02-21-200201L28_MS283_AB01.end1.fastq.gz | wc -l > E016_200201L28_exp200101_MS283_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L29_MS285_AB01/2020-02-21-200201L29_MS285_AB01.end1.fastq.gz | wc -l > E017_200201L29_exp200101_MS285_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L30_MS287_AB01/2020-02-21-200201L30_MS287_AB01.end1.fastq.gz | wc -l > E018_200201L30_exp200101_MS287_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L31_MS207_AB01/2020-02-21-200201L31_MS207_AB01.end1.fastq.gz | wc -l > E019_200201L31_exp200101_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L32_MS289_AB01/2020-02-21-200201L32_MS289_AB01.end1.fastq.gz | wc -l > E020_200201L32_exp200101_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L33_MS282_AB01/2020-02-21-200201L33_MS282_AB01.end1.fastq.gz | wc -l > E021_200201L33_exp200101_MS282_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L34_MS284_AB01/2020-02-21-200201L34_MS284_AB01.end1.fastq.gz | wc -l > E022_200201L34_exp200101_MS284_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L35_MS286_AB01/2020-02-21-200201L35_MS286_AB01.end1.fastq.gz | wc -l > E023_200201L35_exp200101_MS286_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L36_MS288_AB01/2020-02-21-200201L36_MS288_AB01.end1.fastq.gz | wc -l > E024_200201L36_exp200101_MS288_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L01_MS207_input/2020-03-16-200216L01_MS207_input.end1.fastq.gz | wc -l > E025_200216L01_exp200112_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L02_MS289_input/2020-03-16-200216L02_MS289_input.end1.fastq.gz | wc -l > E026_200216L02_exp200112_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L03_MS281_input/2020-03-16-200216L03_MS281_input.end1.fastq.gz | wc -l > E027_200216L03_exp200112_MS281_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L04_MS283_input/2020-03-16-200216L04_MS283_input.end1.fastq.gz | wc -l > E028_200216L04_exp200112_MS283_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L05_MS285_input/2020-03-16-200216L05_MS285_input.end1.fastq.gz | wc -l > E029_200216L05_exp200112_MS285_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L06_MS287_input/2020-03-16-200216L06_MS287_input.end1.fastq.gz | wc -l > E030_200216L06_exp200112_MS287_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L07_MS207_input/2020-03-16-200216L07_MS207_input.end1.fastq.gz | wc -l > E031_200216L07_exp200108_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L08_MS289_input/2020-03-16-200216L08_MS289_input.end1.fastq.gz | wc -l > E032_200216L08_exp200108_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L09_MS282_input/2020-03-16-200216L09_MS282_input.end1.fastq.gz | wc -l > E033_200216L09_exp200108_MS282_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L10_MS284_input/2020-03-16-200216L10_MS284_input.end1.fastq.gz | wc -l > E034_200216L10_exp200108_MS284_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L11_MS286_input/2020-03-16-200216L11_MS286_input.end1.fastq.gz | wc -l > E035_200216L11_exp200108_MS286_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L12_MS288_input/2020-03-16-200216L12_MS288_input.end1.fastq.gz | wc -l > E036_200216L12_exp200108_MS288_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L25_MS207_AB01/2020-03-16-200216L25_MS207_AB01.end1.fastq.gz | wc -l > E037_200216L25_exp200112_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L26_MS289_AB01/2020-03-16-200216L26_MS289_AB01.end1.fastq.gz | wc -l > E038_200216L26_exp200112_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L27_MS281_AB01/2020-03-16-200216L27_MS281_AB01.end1.fastq.gz | wc -l > E039_200216L27_exp200112_MS281_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L28_MS283_AB01/2020-03-16-200216L28_MS283_AB01.end1.fastq.gz | wc -l > E040_200216L28_exp200112_MS283_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L29_MS285_AB01/2020-03-16-200216L29_MS285_AB01.end1.fastq.gz | wc -l > E041_200216L29_exp200112_MS285_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L30_MS287_AB01/2020-03-16-200216L30_MS287_AB01.end1.fastq.gz | wc -l > E042_200216L30_exp200112_MS287_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L31_MS207_AB01/2020-03-16-200216L31_MS207_AB01.end1.fastq.gz | wc -l > E043_200216L31_exp200108_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L32_MS289_AB01/2020-03-16-200216L32_MS289_AB01.end1.fastq.gz | wc -l > E044_200216L32_exp200108_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L33_MS282_AB01/2020-03-16-200216L33_MS282_AB01.end1.fastq.gz | wc -l > E045_200216L33_exp200108_MS282_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L33_MS284_AB01/2020-03-16-200216L33_MS284_AB01.end1.fastq.gz | wc -l > E046_200216L33_exp200108_MS284_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L35_MS286_AB01/2020-03-16-200216L35_MS286_AB01.end1.fastq.gz | wc -l > E047_200216L35_exp200108_MS286_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L36_MS288_AB01/2020-03-16-200216L36_MS288_AB01.end1.fastq.gz | wc -l > E048_200216L36_exp200108_MS288_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L01_MS207.1_input/2019-08-12-190722L01_MS207.1_input.end1.fastq.gz | wc -l > E049_190722L01_exp190711_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L08_MS289_input/2019-08-12-190722L08_MS289_input.end1.fastq.gz | wc -l > E050_190722L08_exp190711_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L02_MS208.1_input/2019-08-12-190722L02_MS208.1_input.end1.fastq.gz | wc -l > E051_190722L02_exp190711_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L03_MS281_input/2019-08-12-190722L03_MS281_input.end1.fastq.gz | wc -l > E052_190722L03_exp190711_MS281_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L04_MS282_input/2019-08-12-190722L04_MS282_input.end1.fastq.gz | wc -l > E053_190722L04_exp190711_MS282_SCD_RAPA-100min_input.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L06_MS284_input/2019-08-12-190722L06_MS284_input.end1.fastq.gz | wc -l > E055_190722L06_exp190711_MS284_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L07_MS285_input/2019-08-12-190722L07_MS285_input.end1.fastq.gz | wc -l > E056_190722L07_exp190711_MS285_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L09_MS207.2_input/2019-08-12-190722L09_MS207.2_input.end1.fastq.gz | wc -l > E057_190722L09_exp190712_MS207_SCD_RAPA-100min_input.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L10_MS208.2_input/2019-08-12-190722L10_MS208.2_input.end1.fastq.gz | wc -l > E059_190722L10_exp190712_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L11_MS209_input/2019-08-12-190722L11_MS209_input.end1.fastq.gz | wc -l > E060_190722L11_exp190712_MS209_SCD_RAPA-100min_input.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L57_MS287_input/2019-10-07-190923L57_MS287_input.end1.fastq.gz | wc -l > E063_190923L57_exp190712_MS287_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L58_MS288_input/2019-10-07-190923L58_MS288_input.end1.fastq.gz | wc -l > E064_190923L58_exp190712_MS288_SCD_RAPA-100min_input.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L19_MS281-RAPA_AB1-Rpb1/2019-08-28-MS190729L19_MS281-RAPA_AB1-Rpb1.end1.fastq.gz | wc -l > E078_190729L19_exp190711_MS281_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L20_MS282-RAPA_AB1-Rpb1/2019-08-28-MS190729L20_MS282-RAPA_AB1-Rpb1.end1.fastq.gz | wc -l > E079_190729L20_exp190711_MS282_SCD_RAPA-100min_AB01.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L28_MS283.2-RAPA_AB1-Rpb1/2019-08-28-MS190729L28_MS283.2-RAPA_AB1-Rpb1.end1.fastq.gz | wc -l > E090_190729L28_exp190712_MS283_SCD_RAPA-100min_AB01.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L30_MS287-RAPA_AB1-Rpb1/2019-08-28-MS190729L30_MS287-RAPA_AB1-Rpb1.end1.fastq.gz | wc -l > E092_190729L30_exp190712_MS287_SCD_RAPA-100min_AB01.fastq.lines
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zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L44_MS283.2-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L44_MS283.2-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E106_190729L44_exp190712_MS283_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L45_MS286-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L45_MS286-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E107_190729L45_exp190712_MS286_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L46_MS287-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L46_MS287-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E108_190729L46_exp190712_MS287_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L47_MS288-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L47_MS288-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E109_190729L47_exp190712_MS288_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L54_MS207-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L54_MS207-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E110_190729L54_exp190712_MS207_SCD_RAPA-100min_AB04_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L55_MS208-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L55_MS208-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E111_190729L55_exp190712_MS208_SCD_RAPA-100min_AB04_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L56_MS283-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L56_MS283-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E112_190729L56_exp190712_MS283_SCD_RAPA-100min_AB04_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L58_MS208.2-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L58_MS208.2-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E113_190729L58_exp190712_MS208_SCD_RAPA-100min_AB04_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L59_MS287-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L59_MS287-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E114_190729L59_exp190712_MS287_SCD_RAPA-100min_AB04_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190729L60_MS288-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190729L60_MS288-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > E115_190729L60_exp190712_MS288_SCD_RAPA-100min_AB04_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L01_MS207_1_input/2019-12-03-191020L01_MS207_1_input.end1.fastq.gz | wc -l > E116_191020L01_exp190711_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L08_MS289_1_input/2019-12-03-191020L08_MS289_1_input.end1.fastq.gz | wc -l > E117_191020L08_exp190711_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L02_MS208_1_input/2019-12-03-191020L02_MS208_1_input.end1.fastq.gz | wc -l > E118_191020L02_exp190711_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L03_MS281_input/2019-12-03-191020L03_MS281_input.end1.fastq.gz | wc -l > E119_191020L03_exp190711_MS281_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L04_MS282_input/2019-12-03-191020L04_MS282_input.end1.fastq.gz | wc -l > E120_191020L04_exp190711_MS282_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L04_MS283_1_input/2019-12-03-191020L04_MS283_1_input.end1.fastq.gz | wc -l > E121_191020L04_exp190711_MS283_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L06_MS284_input/2019-12-03-191020L06_MS284_input.end1.fastq.gz | wc -l > E122_191020L06_exp190711_MS284_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L07_MS285_input/2019-12-03-191020L07_MS285_input.end1.fastq.gz | wc -l > E123_191020L07_exp190711_MS285_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L09_MS207_1_AB01/2019-12-03-191020L09_MS207_1_AB01.end1.fastq.gz | wc -l > E124_191020L09_exp190711_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L16_MS289_1_AB01/2019-12-03-191020L16_MS289_1_AB01.end1.fastq.gz | wc -l > E125_191020L16_exp190711_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L10_MS208_1_AB01/2019-12-03-191020L10_MS208_1_AB01.end1.fastq.gz | wc -l > E126_191020L10_exp190711_MS208_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L11_MS281_AB01/2019-12-03-191020L11_MS281_AB01.end1.fastq.gz | wc -l > E127_191020L11_exp190711_MS281_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L12_MS282_AB01/2019-12-03-191020L12_MS282_AB01.end1.fastq.gz | wc -l > E128_191020L12_exp190711_MS282_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L13_MS283_1_AB01/2019-12-03-191020L13_MS283_1_AB01.end1.fastq.gz | wc -l > E129_191020L13_exp190711_MS283_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L14_MS284_AB01/2019-12-03-191020L14_MS284_AB01.end1.fastq.gz | wc -l > E130_191020L14_exp190711_MS284_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L15_MS285_AB01/2019-12-03-191020L15_MS285_AB01.end1.fastq.gz | wc -l > E131_191020L15_exp190711_MS285_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L17_MS207_1_AB20/2019-12-03-191020L17_MS207_1_AB20.end1.fastq.gz | wc -l > E132_191020L17_exp190711_MS207_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L24_MS289_1_AB20/2019-12-03-191020L24_MS289_1_AB20.end1.fastq.gz | wc -l > E133_191020L24_exp190711_MS289_SCD_RAPA-065min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L18_MS208_1_AB20/2019-12-03-191020L18_MS208_1_AB20.end1.fastq.gz | wc -l > E134_191020L18_exp190711_MS208_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L19_MS281_AB20/2019-12-03-191020L19_MS281_AB20.end1.fastq.gz | wc -l > E135_191020L19_exp190711_MS281_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L20_MS282_AB20/2019-12-03-191020L20_MS282_AB20.end1.fastq.gz | wc -l > E136_191020L20_exp190711_MS282_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L21_MS283_1_AB20/2019-12-03-191020L21_MS283_1_AB20.end1.fastq.gz | wc -l > E137_191020L21_exp190711_MS283_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L22_MS284_AB20/2019-12-03-191020L22_MS284_AB20.end1.fastq.gz | wc -l > E138_191020L22_exp190711_MS284_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L23_MS285_AB20/2019-12-03-191020L23_MS285_AB20.end1.fastq.gz | wc -l > E139_191020L23_exp190711_MS285_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L25_MS207_1_AB48/2019-12-03-191020L25_MS207_1_AB48.end1.fastq.gz | wc -l > E140_191020L25_exp190711_MS207_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L32_MS289_1_AB48/2019-12-03-191020L32_MS289_1_AB48.end1.fastq.gz | wc -l > E141_191020L32_exp190711_MS289_SCD_RAPA-065min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L26_MS208_1_AB48/2019-12-03-191020L26_MS208_1_AB48.end1.fastq.gz | wc -l > E142_191020L26_exp190711_MS208_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L27_MS281_AB48/2019-12-03-191020L27_MS281_AB48.end1.fastq.gz | wc -l > E143_191020L27_exp190711_MS281_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L28_MS282_AB48/2019-12-03-191020L28_MS282_AB48.end1.fastq.gz | wc -l > E144_191020L28_exp190711_MS282_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L29_MS283_1_AB48/2019-12-03-191020L29_MS283_1_AB48.end1.fastq.gz | wc -l > E145_191020L29_exp190711_MS283_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L30_MS284_AB48/2019-12-03-191020L30_MS284_AB48.end1.fastq.gz | wc -l > E146_191020L30_exp190711_MS284_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191020L31_MS285_AB48/2019-12-03-191020L31_MS285_AB48.end1.fastq.gz | wc -l > E147_191020L31_exp190711_MS285_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L01_MS207_2_input/2019-12-03-191015L01_MS207_2_input.end1.fastq.gz | wc -l > E148_191015L01_exp190712_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L08_MS289_2_input/2019-12-03-191015L08_MS289_2_input.end1.fastq.gz | wc -l > E149_191015L08_exp190712_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L02_MS208_2_input/2019-12-03-191015L02_MS208_2_input.end1.fastq.gz | wc -l > E150_191015L02_exp190712_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L03_MS209_input/2019-12-03-191015L03_MS209_input.end1.fastq.gz | wc -l > E151_191015L03_exp190712_MS209_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L04_MS283_2_input/2019-12-03-191015L04_MS283_2_input.end1.fastq.gz | wc -l > E152_191015L04_exp190712_MS283_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L05_MS286_input/2019-12-03-191015L05_MS286_input.end1.fastq.gz | wc -l > E153_191015L05_exp190712_MS286_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L06_MS287_input/2019-12-03-191015L06_MS287_input.end1.fastq.gz | wc -l > E154_191015L06_exp190712_MS287_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L07_MS288_input/2019-12-03-191015L07_MS288_input.end1.fastq.gz | wc -l > E155_191015L07_exp190712_MS288_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L33_MS207_2_AB01/2019-12-03-191015L33_MS207_2_AB01.end1.fastq.gz | wc -l > E156_191015L33_exp190712_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L40_MS289_2_AB01/2019-12-03-191015L40_MS289_2_AB01.end1.fastq.gz | wc -l > E157_191015L40_exp190712_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L34_MS208_2_AB01/2019-12-03-191015L34_MS208_2_AB01.end1.fastq.gz | wc -l > E158_191015L34_exp190712_MS208_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L35_MS209_AB01/2019-12-03-191015L35_MS209_AB01.end1.fastq.gz | wc -l > E159_191015L35_exp190712_MS209_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L36_MS283_2_AB01/2019-12-03-191015L36_MS283_2_AB01.end1.fastq.gz | wc -l > E160_191015L36_exp190712_MS283_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L37_MS286_AB01/2019-12-03-191015L37_MS286_AB01.end1.fastq.gz | wc -l > E161_191015L37_exp190712_MS286_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L38_MS287_AB01/2019-12-03-191015L38_MS287_AB01.end1.fastq.gz | wc -l > E162_191015L38_exp190712_MS287_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L39_MS288_AB01/2019-12-03-191015L39_MS288_AB01.end1.fastq.gz | wc -l > E163_191015L39_exp190712_MS288_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L09_MS207_2_AB20/2019-12-03-191015L09_MS207_2_AB20.end1.fastq.gz | wc -l > E164_191015L09_exp190712_MS207_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L16_MS289_2_AB20/2019-12-03-191015L16_MS289_2_AB20.end1.fastq.gz | wc -l > E165_191015L16_exp190712_MS289_SCD_RAPA-065min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L10_MS208_2_AB20/2019-12-03-191015L10_MS208_2_AB20.end1.fastq.gz | wc -l > E166_191015L10_exp190712_MS208_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L11_MS209_AB20/2019-12-03-191015L11_MS209_AB20.end1.fastq.gz | wc -l > E167_191015L11_exp190712_MS209_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L12_MS283_2_AB20/2019-12-03-191015L12_MS283_2_AB20.end1.fastq.gz | wc -l > E168_191015L12_exp190712_MS283_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L13_MS286_AB20/2019-12-03-191015L13_MS286_AB20.end1.fastq.gz | wc -l > E169_191015L13_exp190712_MS286_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L14_MS287_AB20/2019-12-03-191015L14_MS287_AB20.end1.fastq.gz | wc -l > E170_191015L14_exp190712_MS287_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L15_MS288_AB20/2019-12-03-191015L15_MS288_AB20.end1.fastq.gz | wc -l > E171_191015L15_exp190712_MS288_SCD_RAPA-100min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L17_MS207_2_AB21/2019-12-03-191015L17_MS207_2_AB21.end1.fastq.gz | wc -l > E172_191015L17_exp190712_MS207_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L24_MS289_2_AB21/2019-12-03-191015L24_MS289_2_AB21.end1.fastq.gz | wc -l > E173_191015L24_exp190712_MS289_SCD_RAPA-065min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L18_MS208_2_AB21/2019-12-03-191015L18_MS208_2_AB21.end1.fastq.gz | wc -l > E174_191015L18_exp190712_MS208_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L19_MS209_AB21/2019-12-03-191015L19_MS209_AB21.end1.fastq.gz | wc -l > E175_191015L19_exp190712_MS209_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L20_MS283_2_AB21/2019-12-03-191015L20_MS283_2_AB21.end1.fastq.gz | wc -l > E176_191015L20_exp190712_MS283_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L21_MS286_AB21/2019-12-03-191015L21_MS286_AB21.end1.fastq.gz | wc -l > E177_191015L21_exp190712_MS286_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L22_MS287_AB21/2019-12-03-191015L22_MS287_AB21.end1.fastq.gz | wc -l > E178_191015L22_exp190712_MS287_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L23_MS288_AB21/2019-12-03-191015L23_MS288_AB21.end1.fastq.gz | wc -l > E179_191015L23_exp190712_MS288_SCD_RAPA-100min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L25_MS207_2_AB48/2019-12-03-191015L25_MS207_2_AB48.end1.fastq.gz | wc -l > E180_191015L25_exp190712_MS207_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L32_MS289_2_AB48/2019-12-03-191015L32_MS289_2_AB48.end1.fastq.gz | wc -l > E181_191015L32_exp190712_MS289_SCD_RAPA-065min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L26_MS208_2_AB48/2019-12-03-191015L26_MS208_2_AB48.end1.fastq.gz | wc -l > E182_191015L26_exp190712_MS208_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L27_MS209_AB48/2019-12-03-191015L27_MS209_AB48.end1.fastq.gz | wc -l > E183_191015L27_exp190712_MS209_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L28_MS283_2_AB48/2019-12-03-191015L28_MS283_2_AB48.end1.fastq.gz | wc -l > E184_191015L28_exp190712_MS283_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L29_MS286_AB48/2019-12-03-191015L29_MS286_AB48.end1.fastq.gz | wc -l > E185_191015L29_exp190712_MS286_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L30_MS287_AB48/2019-12-03-191015L30_MS287_AB48.end1.fastq.gz | wc -l > E186_191015L30_exp190712_MS287_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L31_MS288_AB48/2019-12-03-191015L31_MS288_AB48.end1.fastq.gz | wc -l > E187_191015L31_exp190712_MS288_SCD_RAPA-100min_AB48.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L41_MS207_2_AB04/2019-12-03-191015L41_MS207_2_AB04.end1.fastq.gz | wc -l > E188_191015L41_exp190712_MS207_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L48_MS289_2_AB04/2019-12-03-191015L48_MS289_2_AB04.end1.fastq.gz | wc -l > E189_191015L48_exp190712_MS289_SCD_RAPA-065min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L42_MS208_2_AB04/2019-12-03-191015L42_MS208_2_AB04.end1.fastq.gz | wc -l > E190_191015L42_exp190712_MS208_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L43_MS209_AB04/2019-12-03-191015L43_MS209_AB04.end1.fastq.gz | wc -l > E191_191015L43_exp190712_MS209_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L44_MS283_2_AB04/2019-12-03-191015L44_MS283_2_AB04.end1.fastq.gz | wc -l > E192_191015L44_exp190712_MS283_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L45_MS286_AB04/2019-12-03-191015L45_MS286_AB04.end1.fastq.gz | wc -l > E193_191015L45_exp190712_MS286_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L46_MS287_AB04/2019-12-03-191015L46_MS287_AB04.end1.fastq.gz | wc -l > E194_191015L46_exp190712_MS287_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191015L47_MS288_AB04/2019-12-03-191015L47_MS288_AB04.end1.fastq.gz | wc -l > E195_191015L47_exp190712_MS288_SCD_RAPA-100min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L37_MS207_RAPA100_AB01/2020-02-21-200201L37_MS207_RAPA100_AB01.end1.fastq.gz | wc -l > F001_200201L37_exp200120_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L38_MS289_RAPA065_AB01/2020-02-21-200201L38_MS289_RAPA065_AB01.end1.fastq.gz | wc -l > F002_200201L38_exp200120_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L39_MS208_DMSO100_AB01/2020-02-21-200201L39_MS208_DMSO100_AB01.end1.fastq.gz | wc -l > F003_200201L39_exp200120_MS208_SCD_DMSO-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L40_MS208_RAPA040_AB01/2020-02-21-200201L40_MS208_RAPA040_AB01.end1.fastq.gz | wc -l > F004_200201L40_exp200120_MS208_SCD_RAPA-040min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L41_MS208_RAPA100_AB01/2020-02-21-200201L41_MS208_RAPA100_AB01.end1.fastq.gz | wc -l > F005_200201L41_exp200120_MS208_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L42_MS208_RAPAON_AB01/2020-02-21-200201L42_MS208_RAPAON_AB01.end1.fastq.gz | wc -l > F006_200201L42_exp200120_MS208_SCD_RAPA-ON_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L75_exp200120_MS207_RAPA100_input/2020-03-16-200224L75_exp200120_MS207_RAPA100_input.end1.fastq.gz | wc -l > F007_200224L75_exp200120_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L76_exp200120_MS289_RAPA065_input/2020-03-16-200224L76_exp200120_MS289_RAPA065_input.end1.fastq.gz | wc -l > F008_200224L76_exp200120_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L77_exp200120_MS208_DMSO100_input/2020-03-16-200224L77_exp200120_MS208_DMSO100_input.end1.fastq.gz | wc -l > F009_200224L77_exp200120_MS208_SCD_DMSO-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L78_exp200120_MS208_RAPA040_input/2020-03-16-200224L78_exp200120_MS208_RAPA040_input.end1.fastq.gz | wc -l > F010_200224L78_exp200120_MS208_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L79_exp200120_MS208_RAPA100_input/2020-03-16-200224L79_exp200120_MS208_RAPA100_input.end1.fastq.gz | wc -l > F011_200224L79_exp200120_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L80_exp200120_MS208_RAPAON_input/2020-03-16-200224L80_exp200120_MS208_RAPAON_input.end1.fastq.gz | wc -l > F012_200224L80_exp200120_MS208_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L55_exp200120_MS207_RAPA100_AB01/2020-06-18-200526L55_exp200120_MS207_RAPA100_AB01.end1.fastq.gz | wc -l > F013_200526L55_exp200120_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L56_exp200120_MS289_RAPA065_AB01/2020-06-18-200526L56_exp200120_MS289_RAPA065_AB01.end1.fastq.gz | wc -l > F014_200526L56_exp200120_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L57_exp200120_MS208_DMSO100_AB01/2020-06-18-200526L57_exp200120_MS208_DMSO100_AB01.end1.fastq.gz | wc -l > F015_200526L57_exp200120_MS208_SCD_DMSO-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L58_exp200120_MS208_RAPA040_AB01/2020-06-18-200526L58_exp200120_MS208_RAPA040_AB01.end1.fastq.gz | wc -l > F016_200526L58_exp200120_MS208_SCD_RAPA-040min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L59_exp200120_MS208_RAPA100_AB01/2020-06-18-200526L59_exp200120_MS208_RAPA100_AB01.end1.fastq.gz | wc -l > F017_200526L59_exp200120_MS208_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L60_exp200120_MS208_RAPAON_AB01/2020-06-18-200526L60_exp200120_MS208_RAPAON_AB01.end1.fastq.gz | wc -l > F018_200526L60_exp200120_MS208_SCD_RAPA-ON_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L31_exp200120_MS207_RAPA100_input/2020-06-18-200526L31_exp200120_MS207_RAPA100_input.end1.fastq.gz | wc -l > F019_200526L31_exp200120_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L32_exp200120_MS289_RAPA065_input/2020-06-18-200526L32_exp200120_MS289_RAPA065_input.end1.fastq.gz | wc -l > F020_200526L32_exp200120_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L33_exp200120_MS208_DMSO100_input/2020-06-18-200526L33_exp200120_MS208_DMSO100_input.end1.fastq.gz | wc -l > F021_200526L33_exp200120_MS208_SCD_DMSO-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L34_exp200120_MS208_RAPA040_input/2020-06-18-200526L34_exp200120_MS208_RAPA040_input.end1.fastq.gz | wc -l > F022_200526L34_exp200120_MS208_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L35_exp200120_MS208_RAPA100_input/2020-06-18-200526L35_exp200120_MS208_RAPA100_input.end1.fastq.gz | wc -l > F023_200526L35_exp200120_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L36_exp200120_MS208_RAPAON_input/2020-06-18-200526L36_exp200120_MS208_RAPAON_input.end1.fastq.gz | wc -l > F024_200526L36_exp200120_MS208_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L37_MS207_RAPA_AB01/2020-03-16-200216L37_MS207_RAPA_AB01.end1.fastq.gz | wc -l > F025_200216L37_exp200207_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L38_MS289_RAPA_AB01/2020-03-16-200216L38_MS289_RAPA_AB01.end1.fastq.gz | wc -l > F026_200216L38_exp200207_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L39_MS208_DMSO_AB01/2020-03-16-200216L39_MS208_DMSO_AB01.end1.fastq.gz | wc -l > F027_200216L39_exp200207_MS208_SCD_DMSO-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L40_MS208_RAPA-040_AB01/2020-03-16-200216L40_MS208_RAPA-040_AB01.end1.fastq.gz | wc -l > F028_200216L40_exp200207_MS208_SCD_RAPA-040min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L41_MS208_RAPA-100_AB01/2020-03-16-200216L41_MS208_RAPA-100_AB01.end1.fastq.gz | wc -l > F029_200216L41_exp200207_MS208_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L42_MS208_RAPA-ON_AB01/2020-03-16-200216L42_MS208_RAPA-ON_AB01.end1.fastq.gz | wc -l > F030_200216L42_exp200207_MS208_SCD_RAPA-ON_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L13_MS207_RAPA_input/2020-03-16-200216L13_MS207_RAPA_input.end1.fastq.gz | wc -l > F031_200216L13_exp200207_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L14_MS289_RAPA_input/2020-03-16-200216L14_MS289_RAPA_input.end1.fastq.gz | wc -l > F032_200216L14_exp200207_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L15_MS208_DMSO_input/2020-03-16-200216L15_MS208_DMSO_input.end1.fastq.gz | wc -l > F033_200216L15_exp200207_MS208_SCD_DMSO-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L88_MS208_RAPA-040_input/2020-03-16-200216L88_MS208_RAPA-040_input.end1.fastq.gz | wc -l > F034_200216L88_exp200207_MS208_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L17_MS208_RAPA-100_input/2020-03-16-200216L17_MS208_RAPA-100_input.end1.fastq.gz | wc -l > F035_200216L17_exp200207_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L18_MS208_RAPA-ON_input/2020-03-16-200216L18_MS208_RAPA-ON_input.end1.fastq.gz | wc -l > F036_200216L18_exp200207_MS208_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L87_MS208_DMSO_input/2020-03-16-200216L87_MS208_DMSO_input.end1.fastq.gz | wc -l > F037_200216L87_exp200207_MS208_SCD_DMSO-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L89_MS208_RAPA-100_input/2020-03-16-200216L89_MS208_RAPA-100_input.end1.fastq.gz | wc -l > F038_200216L89_exp200207_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L67_exp200207-MS207_RAPA_AB01/2020-06-18-200526L67_exp200207-MS207_RAPA_AB01.end1.fastq.gz | wc -l > F039_200526L67_exp200207_MS207_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L68_exp200207-MS289_RAPA_AB01/2020-06-18-200526L68_exp200207-MS289_RAPA_AB01.end1.fastq.gz | wc -l > F040_200526L68_exp200207_MS289_SCD_RAPA-065min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L69_exp200207-MS208_DMSO_AB01/2020-06-18-200526L69_exp200207-MS208_DMSO_AB01.end1.fastq.gz | wc -l > F041_200526L69_exp200207_MS208_SCD_DMSO-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L70_exp200207-MS208_RAPA-040_AB01/2020-06-18-200526L70_exp200207-MS208_RAPA-040_AB01.end1.fastq.gz | wc -l > F042_200526L70_exp200207_MS208_SCD_RAPA-040min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L71_exp200207-MS208_RAPA-100_AB01/2020-06-18-200526L71_exp200207-MS208_RAPA-100_AB01.end1.fastq.gz | wc -l > F043_200526L71_exp200207_MS208_SCD_RAPA-100min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L72_exp200207-MS208_RAPA-ON_AB01/2020-06-18-200526L72_exp200207-MS208_RAPA-ON_AB01.end1.fastq.gz | wc -l > F044_200526L72_exp200207_MS208_SCD_RAPA-ON_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L43_exp200207-MS207_RAPA_input/2020-06-18-200526L43_exp200207-MS207_RAPA_input.end1.fastq.gz | wc -l > F045_200526L43_exp200207_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L44_exp200207-MS289_RAPA_input/2020-06-18-200526L44_exp200207-MS289_RAPA_input.end1.fastq.gz | wc -l > F046_200526L44_exp200207_MS289_SCD_RAPA-065min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L45_exp200207-MS208_DMSO_input/2020-06-18-200526L45_exp200207-MS208_DMSO_input.end1.fastq.gz | wc -l > F047_200526L45_exp200207_MS208_SCD_DMSO_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L46_exp200207-MS208_RAPA-040_input/2020-06-18-200526L46_exp200207-MS208_RAPA-040_input.end1.fastq.gz | wc -l > F048_200526L46_exp200207_MS208_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L47_exp200207-MS208_RAPA-100_input/2020-06-18-200526L47_exp200207-MS208_RAPA-100_input.end1.fastq.gz | wc -l > F049_200526L47_exp200207_MS208_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L48_exp200207-MS208_RAPA-ON_input/2020-06-18-200526L48_exp200207-MS208_RAPA-ON_input.end1.fastq.gz | wc -l > F050_200526L48_exp200207_MS208_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L01_exp200802_MS207_RAPA40_input/2020-08-27-200808L01_exp200802_MS207_RAPA40_input.end1.fastq.gz | wc -l > G001_200808L01_exp200802_MS207_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L02_exp200802_MS208_RAPA40_input/2020-08-27-200808L02_exp200802_MS208_RAPA40_input.end1.fastq.gz | wc -l > G002_200808L02_exp200802_MS208_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L03_exp200802_MS209_RAPA40_input/2020-08-27-200808L03_exp200802_MS209_RAPA40_input.end1.fastq.gz | wc -l > G003_200808L03_exp200802_MS209_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L04_exp200802_MS282_RAPA40_input/2020-08-27-200808L04_exp200802_MS282_RAPA40_input.end1.fastq.gz | wc -l > G004_200808L04_exp200802_MS282_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L05_exp200802_MS295_RAPA40_input/2020-08-27-200808L05_exp200802_MS295_RAPA40_input.end1.fastq.gz | wc -l > G005_200808L05_exp200802_MS295_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L06_exp200802_MS289_RAPA65_input/2020-08-27-200808L06_exp200802_MS289_RAPA65_input.end1.fastq.gz | wc -l > G006_200808L06_exp200802_MS289_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L07_exp200803_MS207_RAPA40_input/2020-08-27-200808L07_exp200803_MS207_RAPA40_input.end1.fastq.gz | wc -l > G007_200808L07_exp200803_MS207_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L08_exp200803_MS281_RAPA40_input/2020-08-27-200808L08_exp200803_MS281_RAPA40_input.end1.fastq.gz | wc -l > G008_200808L08_exp200803_MS281_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L09_exp200803_MS282_RAPA40_input/2020-08-27-200808L09_exp200803_MS282_RAPA40_input.end1.fastq.gz | wc -l > G009_200808L09_exp200803_MS282_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L10_exp200803_MS294_RAPA40_input/2020-08-27-200808L10_exp200803_MS294_RAPA40_input.end1.fastq.gz | wc -l > G010_200808L10_exp200803_MS294_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L11_exp200803_MS299_RAPA40_input/2020-08-27-200808L11_exp200803_MS299_RAPA40_input.end1.fastq.gz | wc -l > G011_200808L11_exp200803_MS299_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L12_exp200803_MS289_RAPA65_input/2020-08-27-200808L12_exp200803_MS289_RAPA65_input.end1.fastq.gz | wc -l > G012_200808L12_exp200803_MS289_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L13_exp200802_MS207_RAPA40_AB01/2020-08-27-200808L13_exp200802_MS207_RAPA40_AB01.end1.fastq.gz | wc -l > G013_200808L13_exp200802_MS207_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L14_exp200802_MS208_RAPA40_AB01/2020-08-27-200808L14_exp200802_MS208_RAPA40_AB01.end1.fastq.gz | wc -l > G014_200808L14_exp200802_MS208_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L15_exp200802_MS209_RAPA40_AB01/2020-08-27-200808L15_exp200802_MS209_RAPA40_AB01.end1.fastq.gz | wc -l > G015_200808L15_exp200802_MS209_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L16_exp200802_MS282_RAPA40_AB01/2020-08-27-200808L16_exp200802_MS282_RAPA40_AB01.end1.fastq.gz | wc -l > G016_200808L16_exp200802_MS282_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L17_exp200802_MS295_RAPA40_AB01/2020-08-27-200808L17_exp200802_MS295_RAPA40_AB01.end1.fastq.gz | wc -l > G017_200808L17_exp200802_MS295_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L18_exp200802_MS289_RAPA65_AB01/2020-08-27-200808L18_exp200802_MS289_RAPA65_AB01.end1.fastq.gz | wc -l > G018_200808L18_exp200802_MS289_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L19_exp200803_MS207_RAPA40_AB01/2020-08-27-200808L19_exp200803_MS207_RAPA40_AB01.end1.fastq.gz | wc -l > G019_200808L19_exp200803_MS207_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L20_exp200803_MS281_RAPA40_AB01/2020-08-27-200808L20_exp200803_MS281_RAPA40_AB01.end1.fastq.gz | wc -l > G020_200808L20_exp200803_MS281_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L21_exp200803_MS282_RAPA40_AB01/2020-08-27-200808L21_exp200803_MS282_RAPA40_AB01.end1.fastq.gz | wc -l > G021_200808L21_exp200803_MS282_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L22_exp200803_MS294_RAPA40_AB01/2020-08-27-200808L22_exp200803_MS294_RAPA40_AB01.end1.fastq.gz | wc -l > G022_200808L22_exp200803_MS294_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L23_exp200803_MS299_RAPA40_AB01/2020-08-27-200808L23_exp200803_MS299_RAPA40_AB01.end1.fastq.gz | wc -l > G023_200808L23_exp200803_MS299_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L24_exp200803_MS289_RAPA65_AB01/2020-08-27-200808L24_exp200803_MS289_RAPA65_AB01.end1.fastq.gz | wc -l > G024_200808L24_exp200803_MS289_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L29_exp200802_MS207_RAPA40_rep_input/200917L29_exp200802_MS207_RAPA40_rep_input.end1.fastq.gz | wc -l > G025_200917L29_exp200802_MS207_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L30_exp200802_MS208_RAPA40_rep_input/200917L30_exp200802_MS208_RAPA40_rep_input.end1.fastq.gz | wc -l > G026_200917L30_exp200802_MS208_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L31_exp200802_MS209_RAPA40_rep_input/200917L31_exp200802_MS209_RAPA40_rep_input.end1.fastq.gz | wc -l > G027_200917L31_exp200802_MS209_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L37_exp200803_282_RAPA_40_rep_input/200917L37_exp200803_282_RAPA_40_rep_input.end1.fastq.gz | wc -l > G028_200917L37_exp200802_MS282_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L33_exp200802_MS295_RAPA40_rep_input/200917L33_exp200802_MS295_RAPA40_rep_input.end1.fastq.gz | wc -l > G029_200917L33_exp200802_MS295_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L34_exp200802_MS289_RAPA65_rep_input/200917L34_exp200802_MS289_RAPA65_rep_input.end1.fastq.gz | wc -l > G030_200917L34_exp200802_MS289_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L35_exp200803_207_RAPA_40_rep_input/200917L35_exp200803_207_RAPA_40_rep_input.end1.fastq.gz | wc -l > G031_200917L35_exp200803_MS207_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L36_exp200803_281_RAPA_40_rep_input/200917L36_exp200803_281_RAPA_40_rep_input.end1.fastq.gz | wc -l > G032_200917L36_exp200803_MS281_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L32_exp200802_MS282_RAPA40_rep_input/200917L32_exp200802_MS282_RAPA40_rep_input.end1.fastq.gz | wc -l > G033_200917L32_exp200803_MS282_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L38_exp200803_294_RAPA_40_rep_input/200917L38_exp200803_294_RAPA_40_rep_input.end1.fastq.gz | wc -l > G034_200917L38_exp200803_MS294_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L39_exp200803_299_RAPA_40_rep_input/200917L39_exp200803_299_RAPA_40_rep_input.end1.fastq.gz | wc -l > G035_200917L39_exp200803_MS299_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L40_exp200803_289_RAPA_65_rep_input/200917L40_exp200803_289_RAPA_65_rep_input.end1.fastq.gz | wc -l > G036_200917L40_exp200803_MS289_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L01_exp200802_MS207_RAPA40_rep_AB01/200917L01_exp200802_MS207_RAPA40_rep_AB01.end1.fastq.gz | wc -l > G037_200917L01_exp200802_MS207_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L02_exp200802_MS208_RAPA40_rep_AB01/200917L02_exp200802_MS208_RAPA40_rep_AB01.end1.fastq.gz | wc -l > G038_200917L02_exp200802_MS208_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L03_exp200802_MS209_RAPA40_rep_AB01/200917L03_exp200802_MS209_RAPA40_rep_AB01.end1.fastq.gz | wc -l > G039_200917L03_exp200802_MS209_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L05_exp200802_MS295_RAPA40_rep_AB01/200917L05_exp200802_MS295_RAPA40_rep_AB01.end1.fastq.gz | wc -l > G040_200917L05_exp200802_MS295_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L06_exp200802_MS289_RAPA65_rep_AB01/200917L06_exp200802_MS289_RAPA65_rep_AB01.end1.fastq.gz | wc -l > G041_200917L06_exp200802_MS289_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L07_exp200803_207_RAPA_40_rep_AB01/200917L07_exp200803_207_RAPA_40_rep_AB01.end1.fastq.gz | wc -l > G042_200917L07_exp200803_MS207_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L08_exp200803_281_RAPA_40_rep_AB01/200917L08_exp200803_281_RAPA_40_rep_AB01.end1.fastq.gz | wc -l > G043_200917L08_exp200803_MS281_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L09_exp200803_282_RAPA_40_rep_AB01/200917L09_exp200803_282_RAPA_40_rep_AB01.end1.fastq.gz | wc -l > G044_200917L09_exp200803_MS282_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L10_exp200803_294_RAPA_40_rep_AB01/200917L10_exp200803_294_RAPA_40_rep_AB01.end1.fastq.gz | wc -l > G045_200917L10_exp200803_MS294_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L11_exp200803_299_RAPA_40_rep_AB01/200917L11_exp200803_299_RAPA_40_rep_AB01.end1.fastq.gz | wc -l > G046_200917L11_exp200803_MS299_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L12_exp200803_289_RAPA_65_rep_AB01/200917L12_exp200803_289_RAPA_65_rep_AB01.end1.fastq.gz | wc -l > G047_200917L12_exp200803_MS289_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L04_exp200802_MS282_RAPA40_rep_AB01/200917L04_exp200802_MS282_RAPA40_rep_AB01.end1.fastq.gz | wc -l > G048_200917L04_exp200803_MS282_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L13_exp2102_MS207_SCD_DMSO-40min_input/2021-04-19-210325L13_exp2102_MS207_SCD_DMSO-40min_input.end1.fastq.gz | wc -l > G049_210325L13_exp2102_MS207_SCD_DMSO-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L14_exp2102_MS289_SCD_RAPA-60min_input/2021-04-19-210325L14_exp2102_MS289_SCD_RAPA-60min_input.end1.fastq.gz | wc -l > G050_210325L14_exp2102_MS289_SCD_RAPA-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L15_exp2102_MS305_SCD_DMSO-40min_input/2021-04-19-210325L15_exp2102_MS305_SCD_DMSO-40min_input.end1.fastq.gz | wc -l > G051_210325L15_exp2102_MS305_SCD_DMSO-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L16_exp2102_MS305_SCD_RAPA-40min_input/2021-04-19-210325L16_exp2102_MS305_SCD_RAPA-40min_input.end1.fastq.gz | wc -l > G052_210325L16_exp2102_MS305_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L17_exp2102_MS306_SCD_DMSO-40min_input/2021-04-19-210325L17_exp2102_MS306_SCD_DMSO-40min_input.end1.fastq.gz | wc -l > G053_210325L17_exp2102_MS306_SCD_DMSO-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L18_exp2102_MS306_SCD_RAPA-40min_input/2021-04-19-210325L18_exp2102_MS306_SCD_RAPA-40min_input.end1.fastq.gz | wc -l > G054_210325L18_exp2102_MS306_SCD_RAPA-40min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L31_exp2102_MS207_SCD_DMSO-40min_AB01/2021-04-19-210325L31_exp2102_MS207_SCD_DMSO-40min_AB01.end1.fastq.gz | wc -l > G055_210325L31_exp2102_MS207_SCD_DMSO-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L32_exp2102_MS289_SCD_RAPA-60min_AB01/2021-04-19-210325L32_exp2102_MS289_SCD_RAPA-60min_AB01.end1.fastq.gz | wc -l > G056_210325L32_exp2102_MS289_SCD_RAPA-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L33_exp2102_MS305_SCD_DMSO-40min_AB01/2021-04-19-210325L33_exp2102_MS305_SCD_DMSO-40min_AB01.end1.fastq.gz | wc -l > G057_210325L33_exp2102_MS305_SCD_DMSO-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L34_exp2102_MS305_SCD_RAPA-40min_AB01/2021-04-19-210325L34_exp2102_MS305_SCD_RAPA-40min_AB01.end1.fastq.gz | wc -l > G058_210325L34_exp2102_MS305_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L35_exp2102_MS306_SCD_DMSO-40min_AB01/2021-04-19-210325L35_exp2102_MS306_SCD_DMSO-40min_AB01.end1.fastq.gz | wc -l > G059_210325L35_exp2102_MS306_SCD_DMSO-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L36_exp2102_MS306_SCD_RAPA-40min_AB01/2021-04-19-210325L36_exp2102_MS306_SCD_RAPA-40min_AB01.end1.fastq.gz | wc -l > G060_210325L36_exp2102_MS306_SCD_RAPA-40min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L43_MS207_RAPA100_AB01/2020-02-21-200201L43_MS207_RAPA100_AB01.end1.fastq.gz | wc -l > H001_200201L43_exp200118_MS207_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L44_MS249_RAPA100_AB01/2020-02-21-200201L44_MS249_RAPA100_AB01.end1.fastq.gz | wc -l > H002_200201L44_exp200118_MS249_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L45_MS250_RAPA100_AB01/2020-02-21-200201L45_MS250_RAPA100_AB01.end1.fastq.gz | wc -l > H003_200201L45_exp200118_MS250_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L46_MS297_RAPA040_AB01/2020-02-21-200201L46_MS297_RAPA040_AB01.end1.fastq.gz | wc -l > H004_200201L46_exp200118_MS297_SCD_RAPA-040min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L47_MS297_RAPA100_AB01/2020-02-21-200201L47_MS297_RAPA100_AB01.end1.fastq.gz | wc -l > H005_200201L47_exp200118_MS297_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-02-21-200201L48_MS297_RAPAON_AB01/2020-02-21-200201L48_MS297_RAPAON_AB01.end1.fastq.gz | wc -l > H006_200201L48_exp200118_MS297_SCD_RAPA-ON_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L81_exp200118_MS207_RAPA100_input/2020-03-16-200224L81_exp200118_MS207_RAPA100_input.end1.fastq.gz | wc -l > H007_200224L81_exp200118_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L82_exp200118_MS249_RAPA100_input/2020-03-16-200224L82_exp200118_MS249_RAPA100_input.end1.fastq.gz | wc -l > H008_200224L82_exp200118_MS249_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L83_exp200118_MS250_RAPA100_input/2020-03-16-200224L83_exp200118_MS250_RAPA100_input.end1.fastq.gz | wc -l > H009_200224L83_exp200118_MS250_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L84_exp200118_MS297_RAPA040_input/2020-03-16-200224L84_exp200118_MS297_RAPA040_input.end1.fastq.gz | wc -l > H010_200224L84_exp200118_MS297_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L85_exp200118_MS297_RAPA100_input/2020-03-16-200224L85_exp200118_MS297_RAPA100_input.end1.fastq.gz | wc -l > H011_200224L85_exp200118_MS297_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200224L86_exp200118_MS297_RAPAON_input/2020-03-16-200224L86_exp200118_MS297_RAPAON_input.end1.fastq.gz | wc -l > H012_200224L86_exp200118_MS297_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L49_exp200118_MS207_RAPA100_AB107/2020-06-18-200526L49_exp200118_MS207_RAPA100_AB107.end1.fastq.gz | wc -l > H013_200526L49_exp200118_MS207_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L50_exp200118_MS249_RAPA100_AB107/2020-06-18-200526L50_exp200118_MS249_RAPA100_AB107.end1.fastq.gz | wc -l > H014_200526L50_exp200118_MS249_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L51_exp200118_MS250_RAPA100_AB107/2020-06-18-200526L51_exp200118_MS250_RAPA100_AB107.end1.fastq.gz | wc -l > H015_200526L51_exp200118_MS250_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L52_exp200118_MS297_RAPA040_AB107/2020-06-18-200526L52_exp200118_MS297_RAPA040_AB107.end1.fastq.gz | wc -l > H016_200526L52_exp200118_MS297_SCD_RAPA-040min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L53_exp200118_MS297_RAPA100_AB107/2020-06-18-200526L53_exp200118_MS297_RAPA100_AB107.end1.fastq.gz | wc -l > H017_200526L53_exp200118_MS297_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L54_exp200118_MS297_RAPAON_AB107/2020-06-18-200526L54_exp200118_MS297_RAPAON_AB107.end1.fastq.gz | wc -l > H018_200526L54_exp200118_MS297_SCD_RAPA-ON_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L25_exp200118_MS207_RAPA100_input/2020-06-18-200526L25_exp200118_MS207_RAPA100_input.end1.fastq.gz | wc -l > H019_200526L25_exp200118_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L26_exp200118_MS249_RAPA100_input/2020-06-18-200526L26_exp200118_MS249_RAPA100_input.end1.fastq.gz | wc -l > H020_200526L26_exp200118_MS249_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L27_exp200118_MS250_RAPA100_input/2020-06-18-200526L27_exp200118_MS250_RAPA100_input.end1.fastq.gz | wc -l > H021_200526L27_exp200118_MS250_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L28_exp200118_MS297_RAPA040_input/2020-06-18-200526L28_exp200118_MS297_RAPA040_input.end1.fastq.gz | wc -l > H022_200526L28_exp200118_MS297_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L29_exp200118_MS297_RAPA100_input/2020-06-18-200526L29_exp200118_MS297_RAPA100_input.end1.fastq.gz | wc -l > H023_200526L29_exp200118_MS297_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L30_exp200118_MS297_RAPAON_input/2020-06-18-200526L30_exp200118_MS297_RAPAON_input.end1.fastq.gz | wc -l > H024_200526L30_exp200118_MS297_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L17_exp200118_MS207iv_RAPA100_rep_AB107/200917L17_exp200118_MS207iv_RAPA100_rep_AB107.end1.fastq.gz | wc -l > H025_200917L17_exp200118_MS207_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L18_exp200118_MS249_RAPA100_rep_AB107/200917L18_exp200118_MS249_RAPA100_rep_AB107.end1.fastq.gz | wc -l > H026_200917L18_exp200118_MS249_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L19_exp200118_MS250_RAPA100_rep_AB107/200917L19_exp200118_MS250_RAPA100_rep_AB107.end1.fastq.gz | wc -l > H027_200917L19_exp200118_MS250_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L20_exp200118_MS297_RAPA040_rep_AB107/200917L20_exp200118_MS297_RAPA040_rep_AB107.end1.fastq.gz | wc -l > H028_200917L20_exp200118_MS297_SCD-RAPA-040min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L21_exp200118_MS297_RAPA100_rep_AB107/200917L21_exp200118_MS297_RAPA100_rep_AB107.end1.fastq.gz | wc -l > H029_200917L21_exp200118_MS297_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L22_exp200118_MS297_RAPAON_rep_AB107/200917L22_exp200118_MS297_RAPAON_rep_AB107.end1.fastq.gz | wc -l > H030_200917L22_exp200118_MS297_SCD-RAPA-ON_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L43_MS207_RAPA_AB01/2020-03-16-200216L43_MS207_RAPA_AB01.end1.fastq.gz | wc -l > H031_200216L43_exp200205_MS207_SCD_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L44_MS249_RAPA_AB01/2020-03-16-200216L44_MS249_RAPA_AB01.end1.fastq.gz | wc -l > H032_200216L44_exp200205_MS249_SCD_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L45_MS50_RAPA_AB01/2020-03-16-200216L45_MS50_RAPA_AB01.end1.fastq.gz | wc -l > H033_200216L45_exp200205_MS250_SCD_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L46_MS297_RAPA-040_AB01/2020-03-16-200216L46_MS297_RAPA-040_AB01.end1.fastq.gz | wc -l > H034_200216L46_exp200205_MS297_SCD_RAPA-040min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L47_MS297_RAPA-100_AB01/2020-03-16-200216L47_MS297_RAPA-100_AB01.end1.fastq.gz | wc -l > H035_200216L47_exp200205_MS297_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L48_MS297_RAPA-ON_AB01/2020-03-16-200216L48_MS297_RAPA-ON_AB01.end1.fastq.gz | wc -l > H036_200216L48_exp200205_MS297_SCD_RAPA-ON_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L19_MS207_RAPA_input/2020-03-16-200216L19_MS207_RAPA_input.end1.fastq.gz | wc -l > H037_200216L19_exp200205_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L20_MS249_RAPA_input/2020-03-16-200216L20_MS249_RAPA_input.end1.fastq.gz | wc -l > H038_200216L20_exp200205_MS249_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L21_MS50_RAPA_input/2020-03-16-200216L21_MS50_RAPA_input.end1.fastq.gz | wc -l > H039_200216L21_exp200205_MS250_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L22_MS297_RAPA-040_input/2020-03-16-200216L22_MS297_RAPA-040_input.end1.fastq.gz | wc -l > H040_200216L22_exp200205_MS297_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L23_MS297_RAPA-100_input/2020-03-16-200216L23_MS297_RAPA-100_input.end1.fastq.gz | wc -l > H041_200216L23_exp200205_MS297_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200216L24_MS297_RAPA-ON_input/2020-03-16-200216L24_MS297_RAPA-ON_input.end1.fastq.gz | wc -l > H042_200216L24_exp200205_MS297_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L61_exp200205-MS207_RAPA_AB107/2020-06-18-200526L61_exp200205-MS207_RAPA_AB107.end1.fastq.gz | wc -l > H043_200526L61_exp200205_MS207_SCD_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L62_exp200205-MS249_RAPA_AB107/2020-06-18-200526L62_exp200205-MS249_RAPA_AB107.end1.fastq.gz | wc -l > H044_200526L62_exp200205_MS249_SCD_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L63_exp200205-MS50_RAPA_AB107/2020-06-18-200526L63_exp200205-MS50_RAPA_AB107.end1.fastq.gz | wc -l > H045_200526L63_exp200205_MS250_SCD_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L64_exp200205-MS297_RAPA-040_AB107/2020-06-18-200526L64_exp200205-MS297_RAPA-040_AB107.end1.fastq.gz | wc -l > H046_200526L64_exp200205_MS297_SCD_RAPA-040min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L65_exp200205-MS297_RAPA-100_AB107/2020-06-18-200526L65_exp200205-MS297_RAPA-100_AB107.end1.fastq.gz | wc -l > H047_200526L65_exp200205_MS297_SCD_RAPA-100min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L66_exp200205-MS297_RAPA-ON_AB107/2020-06-18-200526L66_exp200205-MS297_RAPA-ON_AB107.end1.fastq.gz | wc -l > H048_200526L66_exp200205_MS297_SCD_RAPA-ON_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L37_exp200205-MS207_RAPA_input/2020-06-18-200526L37_exp200205-MS207_RAPA_input.end1.fastq.gz | wc -l > H049_200526L37_exp200205_MS207_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L38_exp200205-MS249_RAPA_input/2020-06-18-200526L38_exp200205-MS249_RAPA_input.end1.fastq.gz | wc -l > H050_200526L38_exp200205_MS249_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L39_exp200205-MS50_RAPA_input/2020-06-18-200526L39_exp200205-MS50_RAPA_input.end1.fastq.gz | wc -l > H051_200526L39_exp200205_MS250_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L40_exp200205-MS297_RAPA-040_input/2020-06-18-200526L40_exp200205-MS297_RAPA-040_input.end1.fastq.gz | wc -l > H052_200526L40_exp200205_MS297_SCD_RAPA-040min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L41_exp200205-MS297_RAPA-100_input/2020-06-18-200526L41_exp200205-MS297_RAPA-100_input.end1.fastq.gz | wc -l > H053_200526L41_exp200205_MS297_SCD_RAPA-100min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L42_exp200205-MS297_RAPA-ON_input/2020-06-18-200526L42_exp200205-MS297_RAPA-ON_input.end1.fastq.gz | wc -l > H054_200526L42_exp200205_MS297_SCD_RAPA-ON_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L23_exp200205_MS207_RAPA_rep_AB107/200917L23_exp200205_MS207_RAPA_rep_AB107.end1.fastq.gz | wc -l > H055_200917L23_exp200205_MS207_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L24_exp200205_MS249_RAPA_rep_AB107/200917L24_exp200205_MS249_RAPA_rep_AB107.end1.fastq.gz | wc -l > H056_200917L24_exp200205_MS249_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L25_exp200205_MS50_RAPA_rep_AB107/200917L25_exp200205_MS50_RAPA_rep_AB107.end1.fastq.gz | wc -l > H057_200917L25_exp200205_MS250_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L26_exp200205_MS297_RAPA-040_rep_AB107/200917L26_exp200205_MS297_RAPA-040_rep_AB107.end1.fastq.gz | wc -l > H058_200917L26_exp200205_MS297_SCD-RAPA-40min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L27_exp200205_MS297_RAPA-100_rep_AB107/200917L27_exp200205_MS297_RAPA-100_rep_AB107.end1.fastq.gz | wc -l > H059_200917L27_exp200205_MS297_SCD-RAPA-100min_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200917L28_exp200205_MS297_RAPA-ON_rep_AB107/200917L28_exp200205_MS297_RAPA-ON_rep_AB107.end1.fastq.gz | wc -l > H060_200917L28_exp200205_MS297_SCD-RAPA-ON_AB107_rep.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L19_207-RAPA_input/2019-08-28-MS190807L19_207-RAPA_input.end1.fastq.gz | wc -l > H061_190807L19_exp190803_MS207_SCD_RAPA-120min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L20_249-RAPA_input/2019-08-28-MS190807L20_249-RAPA_input.end1.fastq.gz | wc -l > H062_190807L20_exp190803_MS249_SCD_RAPA-120min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L21_250-RAPA_input/2019-08-28-MS190807L21_250-RAPA_input.end1.fastq.gz | wc -l > H063_190807L21_exp190803_MS250_SCD_RAPA-120min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L22_297-RAPA_input/2019-08-28-MS190807L22_297-RAPA_input.end1.fastq.gz | wc -l > H064_190807L22_exp190803_MS297_SCD_RAPA-120min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L23_250-DMSO_input/2019-08-28-MS190807L23_250-DMSO_input.end1.fastq.gz | wc -l > H065_190807L23_exp190803_MS250_SCD_DMSO-120min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L24_297-DMSO_input/2019-08-28-MS190807L24_297-DMSO_input.end1.fastq.gz | wc -l > H066_190807L24_exp190803_MS297_SCD_DMSO-120min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L49_250-DMSO_input_R/2019-08-28-MS190807L49_250-DMSO_input_R.end1.fastq.gz | wc -l > H067_190807L49_exp190803_MS250_SCD_DMSO-120min_input_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L25_207-RAPA_AB107-Rpb1-Flag/2019-08-28-MS190807L25_207-RAPA_AB107-Rpb1-Flag.end1.fastq.gz | wc -l > H068_190807L25_exp190803_MS207_SCD_RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L26_249-RAPA_AB107-Rpb1-Flag/2019-08-28-MS190807L26_249-RAPA_AB107-Rpb1-Flag.end1.fastq.gz | wc -l > H069_190807L26_exp190803_MS249_SCD_RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L27_250-RAPA_AB107-Rpb1-Flag/2019-08-28-MS190807L27_250-RAPA_AB107-Rpb1-Flag.end1.fastq.gz | wc -l > H070_190807L27_exp190803_MS250_SCD_RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L28_297-RAPA_AB107-Rpb1-Flag/2019-08-28-MS190807L28_297-RAPA_AB107-Rpb1-Flag.end1.fastq.gz | wc -l > H071_190807L28_exp190803_MS297_SCD_RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L29_250-DMSO_AB107-Rpb1-Flag/2019-08-28-MS190807L29_250-DMSO_AB107-Rpb1-Flag.end1.fastq.gz | wc -l > H072_190807L29_exp190803_MS250_SCD_DMSO-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L30_297-DMSO_AB107-Rpb1-Flag/2019-08-28-MS190807L30_297-DMSO_AB107-Rpb1-Flag.end1.fastq.gz | wc -l > H073_190807L30_exp190803_MS297_SCD_DMSO-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L31_207-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190807L31_207-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > H074_190807L31_exp190803_MS207_SCD_RAPA-120min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L32_249-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190807L32_249-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > H075_190807L32_exp190803_MS249_SCD_RAPA-120min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L33_250-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190807L33_250-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > H076_190807L33_exp190803_MS250_SCD_RAPA-120min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L34_297-RAPA_AB4-Rpb1-S2P/2019-08-28-MS190807L34_297-RAPA_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > H077_190807L34_exp190803_MS297_SCD_RAPA-120min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L35_250-DMSO_AB4-Rpb1-S2P/2019-08-28-MS190807L35_250-DMSO_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > H078_190807L35_exp190803_MS250_SCD_DMSO-120min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L36_297-DMSO_AB4-Rpb1-S2P/2019-08-28-MS190807L36_297-DMSO_AB4-Rpb1-S2P.end1.fastq.gz | wc -l > H079_190807L36_exp190803_MS297_SCD_DMSO-120min_AB04.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L37_207-RAPA_AB20-H3/2019-08-28-MS190807L37_207-RAPA_AB20-H3.end1.fastq.gz | wc -l > H080_190807L37_exp190803_MS207_SCD_RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L38_249-RAPA_AB20-H3/2019-08-28-MS190807L38_249-RAPA_AB20-H3.end1.fastq.gz | wc -l > H081_190807L38_exp190803_MS249_SCD_RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L39_250-RAPA_AB20-H3/2019-08-28-MS190807L39_250-RAPA_AB20-H3.end1.fastq.gz | wc -l > H082_190807L39_exp190803_MS250_SCD_RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L40_297-RAPA_AB20-H3/2019-08-28-MS190807L40_297-RAPA_AB20-H3.end1.fastq.gz | wc -l > H083_190807L40_exp190803_MS297_SCD_RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L41_250-DMSO_AB20-H3/2019-08-28-MS190807L41_250-DMSO_AB20-H3.end1.fastq.gz | wc -l > H084_190807L41_exp190803_MS250_SCD_DMSO-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L42_297-DMSO_AB20-H3/2019-08-28-MS190807L42_297-DMSO_AB20-H3.end1.fastq.gz | wc -l > H085_190807L42_exp190803_MS297_SCD_DMSO-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L43_207-RAPA_AB21-H4/2019-08-28-MS190807L43_207-RAPA_AB21-H4.end1.fastq.gz | wc -l > H086_190807L43_exp190803_MS207_SCD_RAPA-120min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L44_249-RAPA_AB21-H4/2019-08-28-MS190807L44_249-RAPA_AB21-H4.end1.fastq.gz | wc -l > H087_190807L44_exp190803_MS249_SCD_RAPA-120min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L45_250-RAPA_AB21-H4/2019-08-28-MS190807L45_250-RAPA_AB21-H4.end1.fastq.gz | wc -l > H088_190807L45_exp190803_MS250_SCD_RAPA-120min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L46_297-RAPA_AB21-H4/2019-08-28-MS190807L46_297-RAPA_AB21-H4.end1.fastq.gz | wc -l > H089_190807L46_exp190803_MS297_SCD_RAPA-120min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L47_250-DMSO_AB21-H4/2019-08-28-MS190807L47_250-DMSO_AB21-H4.end1.fastq.gz | wc -l > H090_190807L47_exp190803_MS250_SCD_DMSO-120min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-28-MS190807L48_297-DMSO_AB21-H4/2019-08-28-MS190807L48_297-DMSO_AB21-H4.end1.fastq.gz | wc -l > H091_190807L48_exp190803_MS297_SCD_DMSO-120min_AB21.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L43_MS207-RAPA_AB107-Rpb1/2019-10-07-190923L43_MS207-RAPA_AB107-Rpb1.end1.fastq.gz | wc -l > H092_190923L43_exp190803_MS207_SCD-RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L79_MS207-RAPA_AB107-Rpb1_R/2019-10-07-190923L79_MS207-RAPA_AB107-Rpb1_R.end1.fastq.gz | wc -l > H093_190923L79_exp190803_MS207_SCD-RAPA-120min_AB107_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L44_MS249-RAPA_AB107-Rpb1/2019-10-07-190923L44_MS249-RAPA_AB107-Rpb1.end1.fastq.gz | wc -l > H094_190923L44_exp190803_MS249_SCD-RAPA-120min_AB107_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L80_MS249-RAPA_AB107-Rpb1_R/2019-10-07-190923L80_MS249-RAPA_AB107-Rpb1_R.end1.fastq.gz | wc -l > H095_190923L80_exp190803_MS249_SCD-RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L45_MS250-RAPA_AB107-Rpb1/2019-10-07-190923L45_MS250-RAPA_AB107-Rpb1.end1.fastq.gz | wc -l > H096_190923L45_exp190803_MS250_SCD-RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L46_MS297-RAPA_AB107-Rpb1/2019-10-07-190923L46_MS297-RAPA_AB107-Rpb1.end1.fastq.gz | wc -l > H097_190923L46_exp190803_MS297_SCD-RAPA-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L47_MS250-DMSO_AB107-Rpb1/2019-10-07-190923L47_MS250-DMSO_AB107-Rpb1.end1.fastq.gz | wc -l > H098_190923L47_exp190803_MS250_SCD-DMSO-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L48_MS297-DMSO_AB107-Rpb1/2019-10-07-190923L48_MS297-DMSO_AB107-Rpb1.end1.fastq.gz | wc -l > H099_190923L48_exp190803_MS297_SCD-DMSO-120min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L81_MS297-DMSO_AB107-Rpb1_R/2019-10-07-190923L81_MS297-DMSO_AB107-Rpb1_R.end1.fastq.gz | wc -l > H100_190923L81_exp190803_MS297_SCD-DMSO-120min_AB107_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L49_MS207-RAPA_AB20-H3/2019-10-07-190923L49_MS207-RAPA_AB20-H3.end1.fastq.gz | wc -l > H101_190923L49_exp190803_MS207_SCD-RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L50_MS249-RAPA_AB20-H3/2019-10-07-190923L50_MS249-RAPA_AB20-H3.end1.fastq.gz | wc -l > H102_190923L50_exp190803_MS249_SCD-RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L51_MS250-RAPA_AB20-H3/2019-10-07-190923L51_MS250-RAPA_AB20-H3.end1.fastq.gz | wc -l > H103_190923L51_exp190803_MS250_SCD-RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L52_MS297-RAPA_AB20-H3/2019-10-07-190923L52_MS297-RAPA_AB20-H3.end1.fastq.gz | wc -l > H104_190923L52_exp190803_MS297_SCD-RAPA-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L53_MS250-DMSO_AB20-H3/2019-10-07-190923L53_MS250-DMSO_AB20-H3.end1.fastq.gz | wc -l > H105_190923L53_exp190803_MS250_SCD-DMSO-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L54_MS297-DMSO_AB20-H3/2019-10-07-190923L54_MS297-DMSO_AB20-H3.end1.fastq.gz | wc -l > H106_190923L54_exp190803_MS297_SCD-DMSO-120min_AB20.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-10-07-190923L82_MS207-RAPA_AB20-H3_R/2019-10-07-190923L82_MS207-RAPA_AB20-H3_R.end1.fastq.gz | wc -l > H107_190923L82_exp190803_MS207_SCD-RAPA-120min_AB20_R.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L01_exp201101_MS625_SCD_ATC-45min_input/2020-12-17-201116L01_exp201101_MS625_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J001_201116L01_exp201101_MS625_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L02_exp201101_MS626_SCD_ATC-45min_input/2020-12-17-201116L02_exp201101_MS626_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J002_201116L02_exp201101_MS626_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L03_exp201101_MS628_SCD_ATC-45min_input/2020-12-17-201116L03_exp201101_MS628_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J003_201116L03_exp201101_MS628_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L04_exp201101_MS629_SCD_ATC-45min_input/2020-12-17-201116L04_exp201101_MS629_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J004_201116L04_exp201101_MS629_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L05_exp201101_MS630_SCD_ATC-45min_input/2020-12-17-201116L05_exp201101_MS630_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J005_201116L05_exp201101_MS630_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L06_exp201101_MS205_SCD_RAPA-65min_input/2020-12-17-201116L06_exp201101_MS205_SCD_RAPA-65min_input.end1.fastq.gz | wc -l > J006_201116L06_exp201101_MS205_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L07_exp201102A_MS625_SCD_ATC-45min_input/2020-12-17-201116L07_exp201102A_MS625_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J007_201116L07_exp201102_MS625_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L08_exp201102A_MS631_SCD_ATC-45min_input/2020-12-17-201116L08_exp201102A_MS631_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J008_201116L08_exp201102_MS631_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L09_exp201102A_MS632_SCD_ATC-45min_input/2020-12-17-201116L09_exp201102A_MS632_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J009_201116L09_exp201102_MS632_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L10_exp201102A_MS633_SCD_ATC-45min_input/2020-12-17-201116L10_exp201102A_MS633_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J010_201116L10_exp201102_MS633_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L11_exp201102A_MS636_SCD_ATC-45min_input/2020-12-17-201116L11_exp201102A_MS636_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J011_201116L11_exp201102_MS636_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L12_exp201102A_MS205_SCD_RAPA-65min_input/2020-12-17-201116L12_exp201102A_MS205_SCD_RAPA-65min_input.end1.fastq.gz | wc -l > J012_201116L12_exp201102_MS205_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L13_exp201102B_MS625_SCD_ATC-45min_input/2020-12-17-201116L13_exp201102B_MS625_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J013_201116L13_exp201102_MS625_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L14_exp201102B_MS634_SCD_ATC-45min_input/2020-12-17-201116L14_exp201102B_MS634_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J014_201116L14_exp201102_MS634_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L15_exp201102B_MS635_SCD_ATC-45min_input/2020-12-17-201116L15_exp201102B_MS635_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J015_201116L15_exp201102_MS635_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L16_exp201102B_MS638_SCD_ATC-45min_input/2020-12-17-201116L16_exp201102B_MS638_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J016_201116L16_exp201102_MS638_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L17_exp201102B_MS641_SCD_ATC-45min_input/2020-12-17-201116L17_exp201102B_MS641_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J017_201116L17_exp201102_MS641_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L18_exp201102B_MS648_SCD_ATC-45min_input/2020-12-17-201116L18_exp201102B_MS648_SCD_ATC-45min_input.end1.fastq.gz | wc -l > J018_201116L18_exp201102_MS648_SCD_ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L19_exp201102B_MS205_SCD_RAPA-65min_input/2020-12-17-201116L19_exp201102B_MS205_SCD_RAPA-65min_input.end1.fastq.gz | wc -l > J019_201116L19_exp201102_MS205_SCD_RAPA-65min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L20_exp201101_MS625_SCD_ATC-45min_AB01/2020-12-17-201116L20_exp201101_MS625_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J020_201116L20_exp201101_MS625_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L21_exp201101_MS626_SCD_ATC-45min_AB01/2020-12-17-201116L21_exp201101_MS626_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J021_201116L21_exp201101_MS626_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L22_exp201101_MS628_SCD_ATC-45min_AB01/2020-12-17-201116L22_exp201101_MS628_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J022_201116L22_exp201101_MS628_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L23_exp201101_MS629_SCD_ATC-45min_AB01/2020-12-17-201116L23_exp201101_MS629_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J023_201116L23_exp201101_MS629_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L24_exp201101_MS630_SCD_ATC-45min_AB01/2020-12-17-201116L24_exp201101_MS630_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J024_201116L24_exp201101_MS630_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L25_exp201101_MS205_SCD_RAPA-65min_AB01/2020-12-17-201116L25_exp201101_MS205_SCD_RAPA-65min_AB01.end1.fastq.gz | wc -l > J025_201116L25_exp201101_MS205_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L26_exp201102A_MS625_SCD_ATC-45min_AB01/2020-12-17-201116L26_exp201102A_MS625_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J026_201116L26_exp201102_MS625_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L27_exp201102A_MS631_SCD_ATC-45min_AB01/2020-12-17-201116L27_exp201102A_MS631_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J027_201116L27_exp201102_MS631_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L28_exp201102A_MS632_SCD_ATC-45min_AB01/2020-12-17-201116L28_exp201102A_MS632_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J028_201116L28_exp201102_MS632_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L29_exp201102A_MS633_SCD_ATC-45min_AB01/2020-12-17-201116L29_exp201102A_MS633_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J029_201116L29_exp201102_MS633_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L30_exp201102A_MS636_SCD_ATC-45min_AB01/2020-12-17-201116L30_exp201102A_MS636_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J030_201116L30_exp201102_MS636_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L31_exp201102A_MS205_SCD_RAPA-65min_AB01/2020-12-17-201116L31_exp201102A_MS205_SCD_RAPA-65min_AB01.end1.fastq.gz | wc -l > J031_201116L31_exp201102_MS205_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L32_exp201102B_MS625_SCD_ATC-45min_AB01/2020-12-17-201116L32_exp201102B_MS625_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J032_201116L32_exp201102_MS625_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L33_exp201102B_MS634_SCD_ATC-45min_AB01/2020-12-17-201116L33_exp201102B_MS634_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J033_201116L33_exp201102_MS634_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L34_exp201102B_MS635_SCD_ATC-45min_AB01/2020-12-17-201116L34_exp201102B_MS635_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J034_201116L34_exp201102_MS635_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L35_exp201102B_MS638_SCD_ATC-45min_AB01/2020-12-17-201116L35_exp201102B_MS638_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J035_201116L35_exp201102_MS638_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L36_exp201102B_MS641_SCD_ATC-45min_AB01/2020-12-17-201116L36_exp201102B_MS641_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J036_201116L36_exp201102_MS641_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L37_exp201102B_MS648_SCD_ATC-45min_AB01/2020-12-17-201116L37_exp201102B_MS648_SCD_ATC-45min_AB01.end1.fastq.gz | wc -l > J037_201116L37_exp201102_MS648_SCD_ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201116L38_exp201102B_MS205_SCD_RAPA-65min_AB01/2020-12-17-201116L38_exp201102B_MS205_SCD_RAPA-65min_AB01.end1.fastq.gz | wc -l > J038_201116L38_exp201102_MS205_SCD_RAPA-65min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L15_exp210122_MS652c1_SCD_EtOH-60min_input/2021-02-23-210128L15_exp210122_MS652c1_SCD_EtOH-60min_input.end1.fastq.gz | wc -l > J039_210128L15_exp210122_MS652c1_SCD_EtOH-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L16_exp210122_MS656c1_SCD_EtOH-60min_input/2021-02-23-210128L16_exp210122_MS656c1_SCD_EtOH-60min_input.end1.fastq.gz | wc -l > J040_210128L16_exp210122_MS656c1_SCD_EtOH-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L17_exp210122_MS652c1_SCD_50-ATC-45min_input/2021-02-23-210128L17_exp210122_MS652c1_SCD_50-ATC-45min_input.end1.fastq.gz | wc -l > J041_210128L17_exp210122_MS652c1_SCD_50-ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L18_exp210122_MS656c1_SCD_50-ATC-45min_input/2021-02-23-210128L18_exp210122_MS656c1_SCD_50-ATC-45min_input.end1.fastq.gz | wc -l > J042_210128L18_exp210122_MS656c1_SCD_50-ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L19_exp210122_MS652c1_SCD_50-ATC-60min_input/2021-02-23-210128L19_exp210122_MS652c1_SCD_50-ATC-60min_input.end1.fastq.gz | wc -l > J043_210128L19_exp210122_MS652c1_SCD_50-ATC-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L20_exp210122_MS656c1_SCD_50-ATC-60min_input/2021-02-23-210128L20_exp210122_MS656c1_SCD_50-ATC-60min_input.end1.fastq.gz | wc -l > J044_210128L20_exp210122_MS656c1_SCD_50-ATC-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L21_exp210122_MS205_SCD_RAPA-60min_input/2021-02-23-210128L21_exp210122_MS205_SCD_RAPA-60min_input.end1.fastq.gz | wc -l > J045_210128L21_exp210122_MS205_SCD_RAPA-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L22_exp210122_MS652c2_SCD_EtOH-45min_input/2021-02-23-210128L22_exp210122_MS652c2_SCD_EtOH-45min_input.end1.fastq.gz | wc -l > J046_210128L22_exp210122_MS652c2_SCD_EtOH-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L23_exp210122_MS656c2_SCD_EtOH-45min_input/2021-02-23-210128L23_exp210122_MS656c2_SCD_EtOH-45min_input.end1.fastq.gz | wc -l > J047_210128L23_exp210122_MS656c2_SCD_EtOH-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L24_exp210122_MS652c2_SCD_50-ATC-30min_input/2021-02-23-210128L24_exp210122_MS652c2_SCD_50-ATC-30min_input.end1.fastq.gz | wc -l > J048_210128L24_exp210122_MS652c2_SCD_50-ATC-30min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L25_exp210122_MS656c2_SCD_50-ATC-30min_input/2021-02-23-210128L25_exp210122_MS656c2_SCD_50-ATC-30min_input.end1.fastq.gz | wc -l > J049_210128L25_exp210122_MS656c2_SCD_50-ATC-30min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L26_exp210122_MS652c2_SCD_50-ATC-45min_input/2021-02-23-210128L26_exp210122_MS652c2_SCD_50-ATC-45min_input.end1.fastq.gz | wc -l > J050_210128L26_exp210122_MS652c2_SCD_50-ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L27_exp210122_MS656c2_SCD_50-ATC-45min_input/2021-02-23-210128L27_exp210122_MS656c2_SCD_50-ATC-45min_input.end1.fastq.gz | wc -l > J051_210128L27_exp210122_MS656c2_SCD_50-ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L28_exp210122_MS205_SCD_RAPA-60min_input/2021-02-23-210128L28_exp210122_MS205_SCD_RAPA-60min_input.end1.fastq.gz | wc -l > J052_210128L28_exp210122_MS205_SCD_RAPA-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L01_exp210122_MS652c1_SCD_EtOH-60min_AB01/2021-02-23-210128L01_exp210122_MS652c1_SCD_EtOH-60min_AB01.end1.fastq.gz | wc -l > J053_210128L01_exp210122_MS652c1_SCD_EtOH-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L02_exp210122_MS656c1_SCD_EtOH-60min_AB01/2021-02-23-210128L02_exp210122_MS656c1_SCD_EtOH-60min_AB01.end1.fastq.gz | wc -l > J054_210128L02_exp210122_MS656c1_SCD_EtOH-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L03_exp210122_MS652c1_SCD_50-ATC-45min_AB01/2021-02-23-210128L03_exp210122_MS652c1_SCD_50-ATC-45min_AB01.end1.fastq.gz | wc -l > J055_210128L03_exp210122_MS652c1_SCD_50-ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L04_exp210122_MS656c1_SCD_50-ATC-45min_AB01/2021-02-23-210128L04_exp210122_MS656c1_SCD_50-ATC-45min_AB01.end1.fastq.gz | wc -l > J056_210128L04_exp210122_MS656c1_SCD_50-ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L05_exp210122_MS652c1_SCD_50-ATC-60min_AB01/2021-02-23-210128L05_exp210122_MS652c1_SCD_50-ATC-60min_AB01.end1.fastq.gz | wc -l > J057_210128L05_exp210122_MS652c1_SCD_50-ATC-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L06_exp210122_MS656c1_SCD_50-ATC-60min_AB01/2021-02-23-210128L06_exp210122_MS656c1_SCD_50-ATC-60min_AB01.end1.fastq.gz | wc -l > J058_210128L06_exp210122_MS656c1_SCD_50-ATC-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L07_exp210122_MS205_SCD_RAPA-60min_AB01/2021-02-23-210128L07_exp210122_MS205_SCD_RAPA-60min_AB01.end1.fastq.gz | wc -l > J059_210128L07_exp210122_MS205_SCD_RAPA-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L08_exp210122_MS652c2_SCD_EtOH-45min_AB01/2021-02-23-210128L08_exp210122_MS652c2_SCD_EtOH-45min_AB01.end1.fastq.gz | wc -l > J060_210128L08_exp210122_MS652c2_SCD_EtOH-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L09_exp210122_MS656c2_SCD_EtOH-45min_AB01/2021-02-23-210128L09_exp210122_MS656c2_SCD_EtOH-45min_AB01.end1.fastq.gz | wc -l > J061_210128L09_exp210122_MS656c2_SCD_EtOH-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L10_exp210122_MS652c2_SCD_50-ATC-30min_AB01/2021-02-23-210128L10_exp210122_MS652c2_SCD_50-ATC-30min_AB01.end1.fastq.gz | wc -l > J062_210128L10_exp210122_MS652c2_SCD_50-ATC-30min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L11_exp210122_MS656c2_SCD_50-ATC-30min_AB01/2021-02-23-210128L11_exp210122_MS656c2_SCD_50-ATC-30min_AB01.end1.fastq.gz | wc -l > J063_210128L11_exp210122_MS656c2_SCD_50-ATC-30min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L12_exp210122_MS652c2_SCD_50-ATC-45min_AB01/2021-02-23-210128L12_exp210122_MS652c2_SCD_50-ATC-45min_AB01.end1.fastq.gz | wc -l > J064_210128L12_exp210122_MS652c2_SCD_50-ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L13_exp210122_MS656c2_SCD_50-ATC-45min_AB01/2021-02-23-210128L13_exp210122_MS656c2_SCD_50-ATC-45min_AB01.end1.fastq.gz | wc -l > J065_210128L13_exp210122_MS656c2_SCD_50-ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-02-23-210128L14_exp210122_MS205_SCD_RAPA-60min_AB01/2021-02-23-210128L14_exp210122_MS205_SCD_RAPA-60min_AB01.end1.fastq.gz | wc -l > J066_210128L14_exp210122_MS205_SCD_RAPA-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L01_exp210314_MS698_SCD_EtOH-45min_input/2021-04-19-210325L01_exp210314_MS698_SCD_EtOH-45min_input.end1.fastq.gz | wc -l > J067_210325L01_exp210314_MS698_SCD_EtOH-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L02_exp210314_MS698_SCD_50-ATC-45min_input/2021-04-19-210325L02_exp210314_MS698_SCD_50-ATC-45min_input.end1.fastq.gz | wc -l > J068_210325L02_exp210314_MS698_SCD_50-ATC-45min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L03_exp210314_MS214_SCD_RAPA-60min_input/2021-04-19-210325L03_exp210314_MS214_SCD_RAPA-60min_input.end1.fastq.gz | wc -l > J069_210325L03_exp210314_MS214_SCD_RAPA-60min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L04_exp210314_MS698_SCGE_EtOH-70min_input/2021-04-19-210325L04_exp210314_MS698_SCGE_EtOH-70min_input.end1.fastq.gz | wc -l > J070_210325L04_exp210314_MS698_SCGE_EtOH-70min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L05_exp210314_MS698_SCGE_50-ATC-70min_input/2021-04-19-210325L05_exp210314_MS698_SCGE_50-ATC-70min_input.end1.fastq.gz | wc -l > J071_210325L05_exp210314_MS698_SCGE_50-ATC-70min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L06_exp210314_MS214_SCGE_RAPA-90min_input/2021-04-19-210325L06_exp210314_MS214_SCGE_RAPA-90min_input.end1.fastq.gz | wc -l > J072_210325L06_exp210314_MS214_SCGE_RAPA-90min_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L07_exp210314_MS698_SCD_EtOH-45min_IsFr_input/2021-04-19-210325L07_exp210314_MS698_SCD_EtOH-45min_IsFr_input.end1.fastq.gz | wc -l > J073_210325L07_exp210314_MS698_SCD_EtOH-45min_IS_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L08_exp210314_MS698_SCD_50-ATC-45min_IsFr_input/2021-04-19-210325L08_exp210314_MS698_SCD_50-ATC-45min_IsFr_input.end1.fastq.gz | wc -l > J074_210325L08_exp210314_MS698_SCD_50-ATC-45min_IS_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L09_exp210314_MS214_SCD_RAPA-60min_IsFr_input/2021-04-19-210325L09_exp210314_MS214_SCD_RAPA-60min_IsFr_input.end1.fastq.gz | wc -l > J075_210325L09_exp210314_MS214_SCD_RAPA-60min_IS_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L10_exp210314_MS698_SCGE_EtOH-70min_IsFr_input/2021-04-19-210325L10_exp210314_MS698_SCGE_EtOH-70min_IsFr_input.end1.fastq.gz | wc -l > J076_210325L10_exp210314_MS698_SCGE_EtOH-70min_IS_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L11_exp210314_MS698_SCGE_50-ATC-70min_IsFr_input/2021-04-19-210325L11_exp210314_MS698_SCGE_50-ATC-70min_IsFr_input.end1.fastq.gz | wc -l > J077_210325L11_exp210314_MS698_SCGE_50-ATC-70min_IS_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L12_exp210314_MS214_SCGE_RAPA-90min_IsFr_input/2021-04-19-210325L12_exp210314_MS214_SCGE_RAPA-90min_IsFr_input.end1.fastq.gz | wc -l > J078_210325L12_exp210314_MS214_SCGE_RAPA-90min_IS_input.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L19_exp210314_MS698_SCD_EtOH-45min_AB01/2021-04-19-210325L19_exp210314_MS698_SCD_EtOH-45min_AB01.end1.fastq.gz | wc -l > J079_210325L19_exp210314_MS698_SCD_EtOH-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L20_exp210314_MS698_SCD_50-ATC-45min_AB01/2021-04-19-210325L20_exp210314_MS698_SCD_50-ATC-45min_AB01.end1.fastq.gz | wc -l > J080_210325L20_exp210314_MS698_SCD_50-ATC-45min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L21_exp210314_MS214_SCD_RAPA-60min_AB01/2021-04-19-210325L21_exp210314_MS214_SCD_RAPA-60min_AB01.end1.fastq.gz | wc -l > J081_210325L21_exp210314_MS214_SCD_RAPA-60min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L22_exp210314_MS698_SCGE_EtOH-70min_AB01/2021-04-19-210325L22_exp210314_MS698_SCGE_EtOH-70min_AB01.end1.fastq.gz | wc -l > J082_210325L22_exp210314_MS698_SCGE_EtOH-70min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L23_exp210314_MS698_SCGE_50-ATC-70min_AB01/2021-04-19-210325L23_exp210314_MS698_SCGE_50-ATC-70min_AB01.end1.fastq.gz | wc -l > J083_210325L23_exp210314_MS698_SCGE_50-ATC-70min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L24_exp210314_MS214_SCGE_RAPA-90min_AB01/2021-04-19-210325L24_exp210314_MS214_SCGE_RAPA-90min_AB01.end1.fastq.gz | wc -l > J084_210325L24_exp210314_MS214_SCGE_RAPA-90min_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L25_exp210314_MS698_SCD_EtOH-45min_IsFr_AB01/2021-04-19-210325L25_exp210314_MS698_SCD_EtOH-45min_IsFr_AB01.end1.fastq.gz | wc -l > J085_210325L25_exp210314_MS698_SCD_EtOH-45min_IS_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L26_exp210314_MS698_SCD_50-ATC-45min_IsFr_AB01/2021-04-19-210325L26_exp210314_MS698_SCD_50-ATC-45min_IsFr_AB01.end1.fastq.gz | wc -l > J086_210325L26_exp210314_MS698_SCD_50-ATC-45min_IS_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L27_exp210314_MS214_SCD_RAPA-60min_IsFr_AB01/2021-04-19-210325L27_exp210314_MS214_SCD_RAPA-60min_IsFr_AB01.end1.fastq.gz | wc -l > J087_210325L27_exp210314_MS214_SCD_RAPA-60min_IS_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L28_exp210314_MS698_SCGE_EtOH-70min_IsFr_AB01/2021-04-19-210325L28_exp210314_MS698_SCGE_EtOH-70min_IsFr_AB01.end1.fastq.gz | wc -l > J088_210325L28_exp210314_MS698_SCGE_EtOH-70min_IS_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L29_exp210314_MS698_SCGE_50-ATC-70min_IsFr_AB01/2021-04-19-210325L29_exp210314_MS698_SCGE_50-ATC-70min_IsFr_AB01.end1.fastq.gz | wc -l > J089_210325L29_exp210314_MS698_SCGE_50-ATC-70min_IS_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2021-04-19-210325L30_exp210314_MS214_SCGE_RAPA-90min_IsFr_AB01/2021-04-19-210325L30_exp210314_MS214_SCGE_RAPA-90min_IsFr_AB01.end1.fastq.gz | wc -l > J090_210325L30_exp210314_MS214_SCGE_RAPA-90min_IS_AB01.fastq.lines