zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-06-03-190429L01_MK555/2019-06-03-190429L01_MK555.end1.fastq.gz | wc -l > 190429L01_exp190220_MK555_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-06-03-190429L03_MK645/2019-06-03-190429L03_MK645.end1.fastq.gz | wc -l > 190429L03_exp190220_MK645_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-06-03-190429L04_MK653/2019-06-03-190429L04_MK653.end1.fastq.gz | wc -l > 190429L04_exp190220_MK653_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-06-03-190429L05_MK554.2/2019-06-03-190429L05_MK554.2.end1.fastq.gz | wc -l > 190429L05_exp190220_MK554_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-06-03-190429L06_MK637/2019-06-03-190429L06_MK637.end1.fastq.gz | wc -l > 190429L06_exp190221_MK637_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-06-03-190429L07_MK627/2019-06-03-190429L07_MK627.end1.fastq.gz | wc -l > 190429L07_exp190221_MK627_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L65_MS521_AB101_GFP-NLS-V5/2019-08-12-190722L65_MS521_AB101_GFP-NLS-V5.end1.fastq.gz | wc -l > 190722L65_MS521_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L66_MS529_AB101_WHI5-V5/2019-08-12-190722L66_MS529_AB101_WHI5-V5.end1.fastq.gz | wc -l > 190722L66_MS529_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L67_MS527_AB101_STB1-V5/2019-08-12-190722L67_MS527_AB101_STB1-V5.end1.fastq.gz | wc -l > 190722L67_MS527_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L68_MS522_AB101_SWI4-V5/2019-08-12-190722L68_MS522_AB101_SWI4-V5.end1.fastq.gz | wc -l > 190722L68_MS522_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L69_MS524_AB101_SWI6-V5/2019-08-12-190722L69_MS524_AB101_SWI6-V5.end1.fastq.gz | wc -l > 190722L69_MS524_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L70_MS528_AB101_BCK2-V5/2019-08-12-190722L70_MS528_AB101_BCK2-V5.end1.fastq.gz | wc -l > 190722L70_MS528_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-08-12-190722L71_MS523_AB101_MBP1-V5/2019-08-12-190722L71_MS523_AB101_MBP1-V5.end1.fastq.gz | wc -l > 190722L71_MS523_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/MS191002_L02-MS555_AB101/MS191002_L02-MS555_AB101.end1.fastq.gz | wc -l > 191002L02_exp190916_MK555_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/MS191002_L03-MK582_AB101/MS191002_L03-MK582_AB101.end1.fastq.gz | wc -l > 191002L03_exp190918_MK582_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/MS191002_L04-MK820_AB101/MS191002_L04-MK820_AB101.end1.fastq.gz | wc -l > 191002L04_exp190920_MK820_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/MS191002_L05-MK532_AB101/MS191002_L05-MK532_AB101.end1.fastq.gz | wc -l > 191002L05_exp190918_MK532_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/MS191002_L06-MS554_AB101/MS191002_L06-MS554_AB101.end1.fastq.gz | wc -l > 191002L06_exp190916_MK554_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/MS191002_L08-MK812_AB101/MS191002_L08-MK812_AB101.end1.fastq.gz | wc -l > 191002L08_exp190916_MK812_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L01_MS534_GFP-NLS-5xFLAG_AB107/2019-12-03-191113L01_MS534_GFP-NLS-5xFLAG_AB107.end1.fastq.gz | wc -l > 191113L01_MS534_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L02_MS535_LacI-GFP-NLS-5xFLAG_AB107/2019-12-03-191113L02_MS535_LacI-GFP-NLS-5xFLAG_AB107.end1.fastq.gz | wc -l > 191113L02_MS535_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L03_MS536c1_3xFLAG-WHI5_AB107/2019-12-03-191113L03_MS536c1_3xFLAG-WHI5_AB107.end1.fastq.gz | wc -l > 191113L03_MS536c1_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L04_MS536c2_3xFLAG-WHI5_AB107/2019-12-03-191113L04_MS536c2_3xFLAG-WHI5_AB107.end1.fastq.gz | wc -l > 191113L04_MS536c2_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L05_MS537c1_3xFLAG-WHI5_WIQ_AB107/2019-12-03-191113L05_MS537c1_3xFLAG-WHI5_WIQ_AB107.end1.fastq.gz | wc -l > 191113L05_MS537c1_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L06_MS537c2_3xFLAG-WHI5_WIQ_AB107/2019-12-03-191113L06_MS537c2_3xFLAG-WHI5_WIQ_AB107.end1.fastq.gz | wc -l > 191113L06_MS537c2_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L07_MS538c1_WHI5-5xFLAG_AB107/2019-12-03-191113L07_MS538c1_WHI5-5xFLAG_AB107.end1.fastq.gz | wc -l > 191113L07_MS538c1_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-12-03-191113L08_MS538c2_WHI5-5xFLAG_AB107/2019-12-03-191113L08_MS538c2_WHI5-5xFLAG_AB107.end1.fastq.gz | wc -l > 191113L08_MS538c2_SCEG_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-01-03-191127L01-MK544-alpha-AB101/2020-01-03-191127L01-MK544-alpha-AB101.end1.fastq.gz | wc -l > 191127L01_exp1911_MK554_SCEG_alpha-factor_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L49_MS521_SCE_AB101/2020-03-16-200218L49_MS521_SCE_AB101.end1.fastq.gz | wc -l > 200218L49_MS521_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L50_MS522_SCE_AB101/2020-03-16-200218L50_MS522_SCE_AB101.end1.fastq.gz | wc -l > 200218L50_MS522_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L51_MS523_SCE_AB101/2020-03-16-200218L51_MS523_SCE_AB101.end1.fastq.gz | wc -l > 200218L51_MS523_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L52_MS524_SCE_AB101/2020-03-16-200218L52_MS524_SCE_AB101.end1.fastq.gz | wc -l > 200218L52_MS524_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L53_MS528_SCE_AB101/2020-03-16-200218L53_MS528_SCE_AB101.end1.fastq.gz | wc -l > 200218L53_MS528_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L54_MS529_SCE_AB101/2020-03-16-200218L54_MS529_SCE_AB101.end1.fastq.gz | wc -l > 200218L54_MS529_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L55_MK846_DD_AB01/2020-03-16-200218L55_MK846_DD_AB01.end1.fastq.gz | wc -l > 200218L55_exp200115_MK846_SCD_G1_DMSO_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L56_MK846_DC_AB01/2020-03-16-200218L56_MK846_DC_AB01.end1.fastq.gz | wc -l > 200218L56_exp200115_MK846_SCD_G1_CMK_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L57_MK846_RD_AB01/2020-03-16-200218L57_MK846_RD_AB01.end1.fastq.gz | wc -l > 200218L57_exp200115_MK846_SCD_G1_RAPA_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L58_MK846_RC_AB01/2020-03-16-200218L58_MK846_RC_AB01.end1.fastq.gz | wc -l > 200218L58_exp200115_MK846_SCD_G1_RAPA_CMK_AB01.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L59_MK846_DD_AB107/2020-03-16-200218L59_MK846_DD_AB107.end1.fastq.gz | wc -l > 200218L59_exp200115_MK846_SCD_G1_DMSO_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L60_MK846_DC_AB107/2020-03-16-200218L60_MK846_DC_AB107.end1.fastq.gz | wc -l > 200218L60_exp200115_MK846_SCD_G1_CMK_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L61_MK846_RD_AB107/2020-03-16-200218L61_MK846_RD_AB107.end1.fastq.gz | wc -l > 200218L61_exp200115_MK846_SCD_G1_RAPA_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-03-16-200218L62_MK846_RC_AB107/2020-03-16-200218L62_MK846_RC_AB107.end1.fastq.gz | wc -l > 200218L62_exp200115_MK846_SCD_G1_RAPA_CMK_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-06-18-200526L73_MK810_SCE_AB101/2020-06-18-200526L73_MK810_SCE_AB101.end1.fastq.gz | wc -l > 200526L73_exp2005_MK820_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200709L09_exp200625_MK846_SCD_DMSO_AB107/2020-08-27-200709L09_exp200625_MK846_SCD_DMSO_AB107.end1.fastq.gz | wc -l > 200709L09_exp200625_MK846_SCD_DMSO_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200709L10_exp200625_MK846_SCD_RAPA-30m_AB107/2020-08-27-200709L10_exp200625_MK846_SCD_RAPA-30m_AB107.end1.fastq.gz | wc -l > 200709L10_exp200625_MK846_SCD_RAPA-30min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200709L11_exp200625_MK846_SCD_CMK-02.5m_AB107/2020-08-27-200709L11_exp200625_MK846_SCD_CMK-02.5m_AB107.end1.fastq.gz | wc -l > 200709L11_exp200625_MK846_SCD_CMK-02.5min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200709L12_exp200625_MK846_SCD_CMK-05m_AB107/2020-08-27-200709L12_exp200625_MK846_SCD_CMK-05m_AB107.end1.fastq.gz | wc -l > 200709L12_exp200625_MK846_SCD_CMK-05min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200709L13_exp200625_MK846_SCD_CMK-15m_AB107/2020-08-27-200709L13_exp200625_MK846_SCD_CMK-15m_AB107.end1.fastq.gz | wc -l > 200709L13_exp200625_MK846_SCD_CMK-15min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L25_MS689_SCE_AB101/2020-08-27-200808L25_MS689_SCE_AB101.end1.fastq.gz | wc -l > 200808L25_MK689_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-08-27-200808L26_MS711_SCE_AB101/2020-08-27-200808L26_MS711_SCE_AB101.end1.fastq.gz | wc -l > 200808L26_MK711_SCEG_AB101.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L01_MK918_SCD_DMSO/200925L01_MK918_SCD_DMSO.end1.fastq.gz | wc -l > 200925L01_exp200916_MK918_SCD_DMSO_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L02_MK918_SCD_NMPP1-01min/200925L02_MK918_SCD_NMPP1-01min.end1.fastq.gz | wc -l > 200925L02_exp200916_MK918_SCD_NMPP1-01min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L03_MK918_SCD_NMPP1-03min/200925L03_MK918_SCD_NMPP1-03min.end1.fastq.gz | wc -l > 200925L03_exp200916_MK918_SCD_NMPP1-03min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L04_MK918_SCD_NMPP1-10min/200925L04_MK918_SCD_NMPP1-10min.end1.fastq.gz | wc -l > 200925L04_exp200916_MK918_SCD_NMPP1-10min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L05_MK919_SCD_DMSO/200925L05_MK919_SCD_DMSO.end1.fastq.gz | wc -l > 200925L05_exp200917_MK919_SCD_DMSO_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L10_MK919_SCD_CMK-control-00/200925L10_MK919_SCD_CMK-control-00.end1.fastq.gz | wc -l > 200925L06_exp200917_MK919_SCD_CMK-00min-control_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L06_MK919_SCD_CMK-01min/200925L06_MK919_SCD_CMK-01min.end1.fastq.gz | wc -l > 200925L06_exp200917_MK919_SCD_CMK-01min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L07_MK919_SCD_CMK-03min/200925L07_MK919_SCD_CMK-03min.end1.fastq.gz | wc -l > 200925L07_exp200917_MK919_SCD_CMK-03min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-10-20-200925L08_MK919_SCD_CMK-10min/200925L08_MK919_SCD_CMK-10min.end1.fastq.gz | wc -l > 200925L08_exp200917_MK919_SCD_CMK-10min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L01_exp2011_MK918_SCD_DMSO_AB107/2020-12-17-201119L01_exp2011_MK918_SCD_DMSO_AB107.end1.fastq.gz | wc -l > 201119L01_exp201103_MK918_SCD_DMSO_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L02_exp2011_MK918_SCD_1NMPP1-01min_AB107/2020-12-17-201119L02_exp2011_MK918_SCD_1NMPP1-01min_AB107.end1.fastq.gz | wc -l > 201119L02_exp201103_MK918_SCD_1NMPP1-01min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L03_exp2011_MK918_SCD_1NMPP1-03min_AB107/2020-12-17-201119L03_exp2011_MK918_SCD_1NMPP1-03min_AB107.end1.fastq.gz | wc -l > 201119L03_exp201103_MK918_SCD_1NMPP1-03min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L04_exp2011_MK918_SCD_1NMPP1-10min_AB107/2020-12-17-201119L04_exp2011_MK918_SCD_1NMPP1-10min_AB107.end1.fastq.gz | wc -l > 201119L04_exp201103_MK918_SCD_1NMPP1-10min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L05_exp2011_MK978_SCD_DMSO_AB107/2020-12-17-201119L05_exp2011_MK978_SCD_DMSO_AB107.end1.fastq.gz | wc -l > 201119L05_exp201104_MK978_SCD_DMSO_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L06_exp2011_MK978_SCD_1NMPP1-01min_AB107/2020-12-17-201119L06_exp2011_MK978_SCD_1NMPP1-01min_AB107.end1.fastq.gz | wc -l > 201119L06_exp201104_MK978_SCD_1NMPP1-01min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L07_exp2011_MK978_SCD_1NMPP1-10min_AB107/2020-12-17-201119L07_exp2011_MK978_SCD_1NMPP1-10min_AB107.end1.fastq.gz | wc -l > 201119L07_exp201104_MK978_SCD_1NMPP1-10min_AB107.fastq.lines
zcat /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2020-12-17-201119L08_exp2011_MK846_SCD_DMSO_AB107/2020-12-17-201119L08_exp2011_MK846_SCD_DMSO_AB107.end1.fastq.gz | wc -l > 201119L08_exp201105_MK893_SCD_DMSO_AB107.fastq.lines
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