python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.1x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.1x36mers.sacCer3.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.1x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.1x36mers.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.wig -notitle -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.Schizosaccharomyces_pombe.ASM294v2.20.a.nochrM.ERMTOC.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.Schizosaccharomyces_pombe.ASM294v2.20.a.nochrM.ERMTOC.fragment.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragment
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.sacCer3+Schizosaccharomyces_pombe.ASM294v2.20.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes 210121L01_exp201015_MS214_SCGE_RAPA-00min_DNA.2x36mers.Schizosaccharomyces_pombe.ASM294v2.20.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig -notitle -RPM -excludeReadsMappingToOtherChromosomes -fullFragmentMidPoint 25