python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_0_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_0_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_6_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_6_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-06-20-SLAMseq_exp200525_MS208_40min-RAPA_6_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS208_40min-RAPA_6_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-06-20-SLAMseq_exp200525_MS289_65min-RAPA_6_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS289_65min-RAPA_6_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS1_SCD_2hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS1_SCD_2hr_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS1_SCD_4hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS1_SCD_4hr_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS1_SCD_6hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS1_SCD_6hr_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS207_RAPA_00min_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS207_RAPA_00min_0m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS207_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS207_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS208_100_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_100_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS208_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS208_DMSO_00min_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_DMSO_00min_0m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS208_DMSO_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_DMSO_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS208_ON_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_ON_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS289_65_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS289_65_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS86_SCD_2hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS86_SCD_2hr_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS86_SCD_4hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS86_SCD_4hr_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-08-27-SLAMseq-exp200525_MS86_SCD_6hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS86_SCD_6hr_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS01_SCGE_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS01_SCGE_0m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS01_SCGE_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS01_SCGE_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS60_SCGE_00nM_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS60_SCGE_00nM_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS63_SCGE_10nM_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS63_SCGE_10nM_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS63_SCGE_30nM_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS63_SCGE_30nM_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS80_SCGE_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS80_SCGE_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200717_MS81_SCGE_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS81_SCGE_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS207_SCD_40_RAPA_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS207_SCD_40_RAPA_0m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS207_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS207_SCD_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS281_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS281_SCD_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS282_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS282_SCD_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS289_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS289_SCD_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS294_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS294_SCD_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-07-exp200803_MS299_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS299_SCD_40_RAPA_6m_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Schizosaccharomyces_pombe.ASM294v2/2019-02-06-PomBase.fixed.gtf 2020-10-20-200922_A42L01_SLAM07_RD_exp200525_MS207_RAPA_00min_0min_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.Schizosaccharomyces_pombe.ASM294v2.20.unique.nochrM.renamed.wig 1000 coverage-2020-10-20-200922_A42L01_SLAM07_RD_exp200525_MS207_RAPA_00min_0min_4TU.Schizosaccharomyces_pombe -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_0_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_0_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_6_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS207_40min-RAPA_6_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-06-20-SLAMseq_exp200525_MS208_40min-RAPA_6_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS208_40min-RAPA_6_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-06-20-SLAMseq_exp200525_MS289_65min-RAPA_6_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-06-20-SLAMseq_exp200525_MS289_65min-RAPA_6_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS1_SCD_2hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS1_SCD_2hr_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS1_SCD_4hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS1_SCD_4hr_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS1_SCD_6hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS1_SCD_6hr_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS207_RAPA_00min_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS207_RAPA_00min_0m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS207_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS207_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS208_100_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_100_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS208_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS208_DMSO_00min_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_DMSO_00min_0m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS208_DMSO_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_DMSO_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS208_ON_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS208_ON_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS289_65_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS289_65_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS86_SCD_2hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS86_SCD_2hr_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS86_SCD_4hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS86_SCD_4hr_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-08-27-SLAMseq-exp200525_MS86_SCD_6hr_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-08-27-SLAMseq-exp200525_MS86_SCD_6hr_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS01_SCGE_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS01_SCGE_0m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS01_SCGE_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS01_SCGE_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS60_SCGE_00nM_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS60_SCGE_00nM_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS63_SCGE_10nM_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS63_SCGE_10nM_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS63_SCGE_30nM_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS63_SCGE_30nM_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS80_SCGE_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS80_SCGE_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200717_MS81_SCGE_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200717_MS81_SCGE_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS207_SCD_40_RAPA_0m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS207_SCD_40_RAPA_0m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS207_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS207_SCD_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS281_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS281_SCD_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS282_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS282_SCD_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS289_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS289_SCD_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS294_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS294_SCD_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-07-exp200803_MS299_SCD_40_RAPA_6m_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-07-exp200803_MS299_SCD_40_RAPA_6m_4TU.sacCer3 -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/saccharomyces_cerevisiae-SGD-2018-05-26.gtf 2020-10-20-200922_A42L01_SLAM07_RD_exp200525_MS207_RAPA_00min_0min_4TU-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.sacCer3.unique.nochrM.renamed.wig 1000 coverage-2020-10-20-200922_A42L01_SLAM07_RD_exp200525_MS207_RAPA_00min_0min_4TU.sacCer3 -normalize -singlemodelgenes