python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L05_MS1_sp124_AB102/190115_L05_MS1_sp124_AB102.2x36mers.a.bam SAMstats-2019-02-15-190115_L05_MS1_sp124_AB102.sacCer3.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L06_MS438_0nM_sp124_AB102/190115_L06_MS438_0nM_sp124_AB102.2x36mers.a.bam SAMstats-2019-02-15-190115_L06_MS438_0nM_sp124_AB102.sacCer3.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L05_MS1_sp124_AB102/190115_L05_MS1_sp124_AB102.2x36mers.a.bam SAMstats-2019-02-15-190115_L05_MS1_sp124_AB102.Schizosaccharomyces_pombe.ASM294v2.20.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L06_MS438_0nM_sp124_AB102/190115_L06_MS438_0nM_sp124_AB102.2x36mers.a.bam SAMstats-2019-02-15-190115_L06_MS438_0nM_sp124_AB102.Schizosaccharomyces_pombe.ASM294v2.20.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L08_MS438_30nM_sp124_AB102/190115_L08_MS438_30nM_sp124_AB102.2x36mers.a.bam SAMstats-2019-02-15-190115_L08_MS438_30nM_sp124_AB102.Schizosaccharomyces_pombe.ASM294v2.20.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L09_MS1_sp124_AB107/190115_L09_MS1_sp124_AB107.2x36mers.a.bam SAMstats-2019-02-15-190115_L09_MS1_sp124_AB107.Schizosaccharomyces_pombe.ASM294v2.20.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Schizosaccharomyces_pombe.ASM294v2.20.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L08_MS438_30nM_sp124_AB102/190115_L08_MS438_30nM_sp124_AB102.2x36mers.a.bam SAMstats-2019-02-15-190115_L08_MS438_30nM_sp124_AB102.sacCer3.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/2017/datasets-ChIP/2019-02-15-190115_L09_MS1_sp124_AB107/190115_L09_MS1_sp124_AB107.2x36mers.a.bam SAMstats-2019-02-15-190115_L09_MS1_sp124_AB107.sacCer3.nochrM.ERMTOC -bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.nochrM.chrom.sizes -paired -excludeReadsMappingToOtherChromosomes