/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.MACS-2.1.0.p1e-1 -g 12157105 -f BAMPE --to-large -p 1e-1 --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.bam -n WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.bam -n Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.bam -n Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.MACS-2.1.0 -g hs -f BAMPE --to-large --keep-dup all --nomodel