zcat 2017-09-13-MiSeqRun/MS1-SCD-1_S7_L001_R1_001.fastq.gz | wc -l > WT-MS1-SCD-rep1_S7.fastq.lines
zcat 2017-09-13-MiSeqRun/MS1-SCD-2_S10_L001_R1_001.fastq.gz | wc -l > WT-MS1-SCD-rep2_S10.fastq.lines
zcat 2017-09-13-MiSeqRun/MS1-SCE-1_S1_L001_R1_001.fastq.gz | wc -l > WT-MS1-SCE-rep1_S1.fastq.lines
zcat 2017-09-13-MiSeqRun/MS1-SCE-2_S4_L001_R1_001.fastq.gz | wc -l > WT-MS1-SCE-rep2_S4.fastq.lines
zcat 2017-09-13-MiSeqRun/MS49-SCD-1_S8_L001_R1_001.fastq.gz | wc -l > Cln3-MS49-SCD-rep1_S8.fastq.lines
zcat 2017-09-13-MiSeqRun/MS49-SCD-2_S11_L001_R1_001.fastq.gz | wc -l > Cln3-MS49-SCD-rep2_S11.fastq.lines
zcat 2017-09-13-MiSeqRun/MS49-SCE-1_S2_L001_R1_001.fastq.gz | wc -l > Cln3-MS49-SCE-rep1_S2.fastq.lines
zcat 2017-09-13-MiSeqRun/MS49-SCE-2_S5_L001_R1_001.fastq.gz | wc -l > Cln3-MS49-SCE-rep2_S5.fastq.lines
zcat 2017-09-13-MiSeqRun/MS51-SCD-1_S9_L001_R1_001.fastq.gz | wc -l > Whi5-MS51-SCD-rep1_S9.fastq.lines
zcat 2017-09-13-MiSeqRun/MS51-SCD-2_S12_L001_R1_001.fastq.gz | wc -l > Whi5-MS51-SCD-rep2_S12.fastq.lines
zcat 2017-09-13-MiSeqRun/MS51-SCE-1_S3_L001_R1_001.fastq.gz | wc -l > Whi5-MS51-SCE-rep1_S3.fastq.lines
zcat 2017-09-13-MiSeqRun/MS51-SCE-2_S6_L001_R1_001.fastq.gz | wc -l > Whi5-MS51-SCE-rep2_S6.fastq.lines