python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Cln3-MS49-SCD-rep1_S8.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Cln3-MS49-SCD-rep2_S11.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Cln3-MS49-SCE-rep1_S2.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Cln3-MS49-SCE-rep2_S5.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Whi5-MS51-SCD-rep1_S9.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Whi5-MS51-SCD-rep2_S12.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Whi5-MS51-SCE-rep1_S3.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.Whi5-MS51-SCE-rep2_S6.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.WT-MS1-SCD-rep1_S7.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.WT-MS1-SCD-rep2_S10.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.WT-MS1-SCE-rep1_S1.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.500bp.table 0 WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.500bp.table.WT-MS1-SCE-rep2_S4.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Cln3-MS49-SCD-rep1_S8.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Cln3-MS49-SCD-rep2_S11.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Cln3-MS49-SCE-rep1_S2.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Cln3-MS49-SCE-rep2_S5.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Whi5-MS51-SCD-rep1_S9.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Whi5-MS51-SCD-rep2_S12.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Whi5-MS51-SCE-rep1_S3.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.Whi5-MS51-SCE-rep2_S6.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.WT-MS1-SCD-rep1_S7.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.WT-MS1-SCD-rep2_S10.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.WT-MS1-SCE-rep1_S1.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.500merge.200bp.table 0 WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.500merge.200bp.table.WT-MS1-SCE-rep2_S4.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Cln3-MS49-SCD-rep1_S8.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Cln3-MS49-SCD-rep1_S8.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Cln3-MS49-SCD-rep2_S11.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Cln3-MS49-SCD-rep2_S11.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Cln3-MS49-SCE-rep1_S2.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Cln3-MS49-SCE-rep1_S2.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Cln3-MS49-SCE-rep2_S5.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Whi5-MS51-SCD-rep1_S9.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Whi5-MS51-SCD-rep1_S9.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Whi5-MS51-SCD-rep2_S12.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Whi5-MS51-SCD-rep2_S12.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Whi5-MS51-SCE-rep1_S3.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Whi5-MS51-SCE-rep1_S3.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 Whi5-MS51-SCE-rep2_S6.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.Whi5-MS51-SCE-rep2_S6.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 WT-MS1-SCD-rep1_S7.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.WT-MS1-SCD-rep1_S7.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 WT-MS1-SCD-rep2_S10.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.WT-MS1-SCD-rep2_S10.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 WT-MS1-SCE-rep1_S1.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.WT-MS1-SCE-rep1_S1.readcounts -singleFieldRegion -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRawReadCountsBAM.py post-IDR.noPL.peaks.pvalue.200merge.200bp.table 0 WT-MS1-SCE-rep2_S4.2x36mers.unique.nochrM.dedup.bam post-IDR.noPL.peaks.pvalue.200merge.200bp.table.WT-MS1-SCE-rep2_S4.readcounts -singleFieldRegion -uniqueBAM