python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Early_Embryo_RepA-GSM2385309.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Early_Embryo_RepA-GSM2385309.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Early_Embryo_RepB-GSM2385312.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Early_Embryo_RepB-GSM2385312.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Early_Embryo_RepC-GSM2385315.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Early_Embryo_RepC-GSM2385315.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- input_control-GSM2385318.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes input_control-GSM2385318.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Larval_stage_3_RepA-GSM2385310.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Larval_stage_3_RepA-GSM2385310.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Larval_stage_3_RepB-GSM2385313.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Larval_stage_3_RepB-GSM2385313.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Larval_stage_3_RepC-GSM2385316.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Larval_stage_3_RepC-GSM2385316.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Young_adult_RepA-GSM2385311.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Young_adult_RepA-GSM2385311.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Young_adult_RepB-GSM2385314.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Young_adult_RepB-GSM2385314.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py --- Young_adult_RepC-GSM2385317.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Young_adult_RepC-GSM2385317.2x36mers.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Early_Embryo_RepA-GSM2385309.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Early_Embryo_RepA-GSM2385309.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Early_Embryo_RepB-GSM2385312.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Early_Embryo_RepB-GSM2385312.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Early_Embryo_RepC-GSM2385315.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Early_Embryo_RepC-GSM2385315.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- input_control-GSM2385318.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes input_control-GSM2385318.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Larval_stage_3_RepA-GSM2385310.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Larval_stage_3_RepA-GSM2385310.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Larval_stage_3_RepB-GSM2385313.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Larval_stage_3_RepB-GSM2385313.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Larval_stage_3_RepC-GSM2385316.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Larval_stage_3_RepC-GSM2385316.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Young_adult_RepA-GSM2385311.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Young_adult_RepA-GSM2385311.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Young_adult_RepB-GSM2385314.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Young_adult_RepB-GSM2385314.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py --- Young_adult_RepC-GSM2385317.2x36mers.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/ce10/ce10.chrom.sizes Young_adult_RepC-GSM2385317.2x36mers.unique.5p.wig -notitle -uniqueBAM -RPM -shift 5