python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.PAS-seq.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b1/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.RAMPAGE.b2/STAR-2.5.3aAligned.sortedByCoord.out.dedup.end1.5p.minus.wig -end1only -stranded - -notitle -RPM &