cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/transcriptome/SAM_reads_in_genes3_BAM.py /users/marinovg/genomes/hg19/gencode/gencode_v19/gencode.v19.annotation.gtf /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.ATGTCA-alignments/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.ATGTCA_Aligned.sortedByCoord.out.bam /users/marinovg/genomes/hg19/hg19.chrom.sizes sam_reads_genes-RNA-seq-ribozero-primary_keratinocyte-d6.b2.t1.ATGTCA -nomulti &