cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_CTCF.b1.t1.AGTCAA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.CTCF-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired -noNHinfo
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_CTCF.b2.t1.AGTTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.CTCF-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF.b1.t1.ATCACG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.CTCF-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF.b2.t1.CGATGT.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.CTCF-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_H3K27ac.b1.t1.AGTCAA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27ac-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_H3K27ac.b2.t1.AGTTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27ac-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b1.t1.ACAGTG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27ac-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b2.t1.GCCAAT.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27ac-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_H3K27me3.b1.t1.AGTCAA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27me3-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_H3K27me3.b2.t1.AGTTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27me3-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b1.t1.ATCACG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27me3-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b2.t1.CGATGT.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K27me3-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_H3K4me1.b1.t1.AGTCAA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K4me1-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_input_H3K4me1.b2.t1.AGTTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K4me1-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b1.t1.ACAGTG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K4me1-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b2.t1.GCCAAT.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d0.H3K4me1-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_CTCF.b1.t1.ATGTCA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.CTCF-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_CTCF.b2.t1.CCGTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.CTCF-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF.b1.t1.TTAGGC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.CTCF-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF.b2.t1.TGACCA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.CTCF-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_H3K27ac.b1.t1.ATGTCA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27ac-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_H3K27ac.b2.t1.CCGTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27ac-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b1.t1.ACTTGA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27ac-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b2.t1.TAGCTT.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27ac-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_H3K27me3.b1.t1.ATGTCA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27me3-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_H3K27me3.b2.t1.CCGTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27me3-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b1.t1.TTAGGC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27me3-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b2.t1.TGACCA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K27me3-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_H3K4me1.b1.t1.ATGTCA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K4me1-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_input_H3K4me1.b2.t1.CCGTCC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K4me1-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b1.t1.ACTTGA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K4me1-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b2.t1.TAGCTT.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d3.H3K4me1-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_CTCF.b1.t1.GTAGAG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.CTCF-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_CTCF.b2.t1.GTCCGC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.CTCF-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF.b1.t1.CAGATC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.CTCF-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF.b2.t1.GATCAG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.CTCF-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_H3K27ac.b1.t1.GTAGAG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27ac-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_H3K27ac.b2.t1.GTCCGC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27ac-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b1.t1.GGCTAC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27ac-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b2.t1.CTTGTA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27ac-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_H3K27me3.b1.t1.GTAGAG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27me3-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_H3K27me3.b2.t1.GTCCGC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27me3-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b1.t1.CAGATC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27me3-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b2.t1.GATCAG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K27me3-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_H3K4me1.b1.t1.GTAGAG.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K4me1-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_input_H3K4me1.b2.t1.GTCCGC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K4me1-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b1.t1.GGCTAC.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K4me1-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2016-08-10.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b2.t1.CTTGTA.1.PE2SE.bam SAMstats-2016-08-10.primary_keratinocyte-d6.H3K4me1-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl1/ChIP-seq_input_CTCF.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.CTCF-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl2/ChIP-seq_input_CTCF.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.CTCF-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF.b1.t1.ATCACG.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.CTCF-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_CTCF.b2.t1.CGATGT.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.CTCF-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl1/ChIP-seq_input_H3K27ac.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27ac-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl2/ChIP-seq_input_H3K27ac.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27ac-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b1.t1.ACAGTG.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27ac-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b2.t1.GCCAAT.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27ac-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl1/ChIP-seq_input_H3K27me3.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27me3-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl2/ChIP-seq_input_H3K27me3.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27me3-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b1.t1.ATCACG.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27me3-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b2.t1.CGATGT.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K27me3-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl1/ChIP-seq_input_H3K4me1.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K4me1-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl2/ChIP-seq_input_H3K4me1.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K4me1-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep1/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b1.t1.ACAGTG.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K4me1-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep2/primary_keratinocyte-d0.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b2.t1.GCCAAT.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d0.H3K4me1-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl1/ChIP-seq_input_CTCF.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.CTCF-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl2/ChIP-seq_input_CTCF.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.CTCF-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF.b1.t1.TTAGGC.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.CTCF-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_CTCF.b2.t1.TGACCA.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.CTCF-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl1/ChIP-seq_input_H3K27ac.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27ac-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl2/ChIP-seq_input_H3K27ac.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27ac-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b1.t1.ACTTGA.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27ac-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b2.t1.TAGCTT.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27ac-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl1/ChIP-seq_input_H3K27me3.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27me3-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl2/ChIP-seq_input_H3K27me3.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27me3-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b1.t1.TTAGGC.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27me3-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b2.t1.TGACCA.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K27me3-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl1/ChIP-seq_input_H3K4me1.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K4me1-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl2/ChIP-seq_input_H3K4me1.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K4me1-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep1/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b1.t1.ACTTGA.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K4me1-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep2/primary_keratinocyte-d3.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b2.t1.TAGCTT.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d3.H3K4me1-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl1/ChIP-seq_input_CTCF.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.CTCF-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/ctl2/ChIP-seq_input_CTCF.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.CTCF-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF.b1.t1.CAGATC.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.CTCF-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_CTCF.b2.t1.GATCAG.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.CTCF-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl1/ChIP-seq_input_H3K27ac.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27ac-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/ctl2/ChIP-seq_input_H3K27ac.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27ac-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b1.t1.GGCTAC.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27ac-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27ac.b2.t1.CTTGTA.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27ac-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl1/ChIP-seq_input_H3K27me3.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27me3-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/ctl2/ChIP-seq_input_H3K27me3.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27me3-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b1.t1.CAGATC.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27me3-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K27me3.b2.t1.GATCAG.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K27me3-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl1/ChIP-seq_input_H3K4me1.b1.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K4me1-Control-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/ctl2/ChIP-seq_input_H3K4me1.b2.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K4me1-Control-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep1/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b1.t1.GGCTAC.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K4me1-ChIP-Rep1 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/histones/2017-01-23.primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1/align/rep2/primary_keratinocyte-d6.GGR.Stanford_Snyder.ChIP-seq_H3K4me1.b2.t1.CTTGTA.1.PE2SE.bam SAMstats-2017-01-23.primary_keratinocyte-d6.H3K4me1-ChIP-Rep2 -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.GGR.Stanford_Khavari.PAS-seq.b1.t1.GGTGAG-alignments/primary_keratinocyte-d00.GGR.Stanford_Khavari.PAS-seq.b1.t1.GGTGAG_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d00.b1.t1.GGTGAG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d00.GGR.Stanford_Khavari.PAS-seq.b2.t1.GCGAAT-alignments/primary_keratinocyte-d00.GGR.Stanford_Khavari.PAS-seq.b2.t1.GCGAAT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d00.b2.t1.GCGAAT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.GGR.Stanford_Khavari.PAS-seq.b1.t1.CGGTTA-alignments/primary_keratinocyte-d05.GGR.Stanford_Khavari.PAS-seq.b1.t1.CGGTTA_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d05.b1.t1.CGGTTA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d05.GGR.Stanford_Khavari.PAS-seq.b2.t1.TGGCGA-alignments/primary_keratinocyte-d05.GGR.Stanford_Khavari.PAS-seq.b2.t1.TGGCGA_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d05.b2.t1.TGGCGA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.GGR.Stanford_Khavari.PAS-seq.b1.t1.GCGCTG-alignments/primary_keratinocyte-d10.GGR.Stanford_Khavari.PAS-seq.b1.t1.GCGCTG_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d10.b1.t1.GCGCTG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d10.GGR.Stanford_Khavari.PAS-seq.b2.t1.CAATGC-alignments/primary_keratinocyte-d10.GGR.Stanford_Khavari.PAS-seq.b2.t1.CAATGC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d10.b2.t1.CAATGC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.GGR.Stanford_Khavari.PAS-seq.b1.t1.GACGAT-alignments/primary_keratinocyte-d15.GGR.Stanford_Khavari.PAS-seq.b1.t1.GACGAT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d15.b1.t1.GACGAT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d15.GGR.Stanford_Khavari.PAS-seq.b2.t1.AAGACA-alignments/primary_keratinocyte-d15.GGR.Stanford_Khavari.PAS-seq.b2.t1.AAGACA_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d15.b2.t1.AAGACA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.GGR.Stanford_Khavari.PAS-seq.b1.t1.ACCTAC-alignments/primary_keratinocyte-d20.GGR.Stanford_Khavari.PAS-seq.b1.t1.ACCTAC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d20.b1.t1.ACCTAC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d20.GGR.Stanford_Khavari.PAS-seq.b2.t1.CAGATG-alignments/primary_keratinocyte-d20.GGR.Stanford_Khavari.PAS-seq.b2.t1.CAGATG_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d20.b2.t1.CAGATG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.GGR.Stanford_Khavari.PAS-seq.b1.t1.AGAATC-alignments/primary_keratinocyte-d25.GGR.Stanford_Khavari.PAS-seq.b1.t1.AGAATC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d25.b1.t1.AGAATC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d25.GGR.Stanford_Khavari.PAS-seq.b2.t1.GTTACC-alignments/primary_keratinocyte-d25.GGR.Stanford_Khavari.PAS-seq.b2.t1.GTTACC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d25.b2.t1.GTTACC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.GGR.Stanford_Khavari.PAS-seq.b1.t1.AACCGA-alignments/primary_keratinocyte-d30.GGR.Stanford_Khavari.PAS-seq.b1.t1.AACCGA_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d30.b1.t1.AACCGA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d30.GGR.Stanford_Khavari.PAS-seq.b2.t1.CAGCGT-alignments/primary_keratinocyte-d30.GGR.Stanford_Khavari.PAS-seq.b2.t1.CAGCGT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d30.b2.t1.CAGCGT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.GGR.Stanford_Khavari.PAS-seq.b1.t1.CAACAG-alignments/primary_keratinocyte-d35.GGR.Stanford_Khavari.PAS-seq.b1.t1.CAACAG_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d35.b1.t1.CAACAG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d35.GGR.Stanford_Khavari.PAS-seq.b2.t1.GCAGCC-alignments/primary_keratinocyte-d35.GGR.Stanford_Khavari.PAS-seq.b2.t1.GCAGCC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d35.b2.t1.GCAGCC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.GGR.Stanford_Khavari.PAS-seq.b1.t1.CGAAGG-alignments/primary_keratinocyte-d40.GGR.Stanford_Khavari.PAS-seq.b1.t1.CGAAGG_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d40.b1.t1.CGAAGG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d40.GGR.Stanford_Khavari.PAS-seq.b2.t1.CGATCT-alignments/primary_keratinocyte-d40.GGR.Stanford_Khavari.PAS-seq.b2.t1.CGATCT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d40.b2.t1.CGATCT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.GGR.Stanford_Khavari.PAS-seq.b1.t1.AACGCC-alignments/primary_keratinocyte-d45.GGR.Stanford_Khavari.PAS-seq.b1.t1.AACGCC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d45.b1.t1.AACGCC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d45.GGR.Stanford_Khavari.PAS-seq.b2.t1.CACTAA-alignments/primary_keratinocyte-d45.GGR.Stanford_Khavari.PAS-seq.b2.t1.CACTAA_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d45.b2.t1.CACTAA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.GGR.Stanford_Khavari.PAS-seq.b1.t1.CAAGCA-alignments/primary_keratinocyte-d50.GGR.Stanford_Khavari.PAS-seq.b1.t1.CAAGCA_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d50.b1.t1.CAAGCA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d50.GGR.Stanford_Khavari.PAS-seq.b2.t1.GGAGGT-alignments/primary_keratinocyte-d50.GGR.Stanford_Khavari.PAS-seq.b2.t1.GGAGGT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d50.b2.t1.GGAGGT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.GGR.Stanford_Khavari.PAS-seq.b1.t1.CACACT-alignments/primary_keratinocyte-d55.GGR.Stanford_Khavari.PAS-seq.b1.t1.CACACT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d55.b1.t1.CACACT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d55.GGR.Stanford_Khavari.PAS-seq.b2.t1.TAATCG-alignments/primary_keratinocyte-d55.GGR.Stanford_Khavari.PAS-seq.b2.t1.TAATCG_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d55.b2.t1.TAATCG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.GGR.Stanford_Khavari.PAS-seq.b1.t1.TGGATT-alignments/primary_keratinocyte-d60.GGR.Stanford_Khavari.PAS-seq.b1.t1.TGGATT_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d60.b1.t1.TGGATT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/PAS-seq/primary_keratinocyte-d60.GGR.Stanford_Khavari.PAS-seq.b2.t1.GATCAC-alignments/primary_keratinocyte-d60.GGR.Stanford_Khavari.PAS-seq.b2.t1.GATCAC_Aligned.sortedByCoord.out.bam SAMstats-PAS-seq-primary_keratinocyte-d60.b2.t1.GATCAC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.GGR.Stanford_Snyder.RAMPAGE.b1.t1.AGGTAA-alignments/primary_keratinocyte-d00.GGR.Stanford_Snyder.RAMPAGE.b1.t1.AGGTAA_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d00.b1.t1.AGGTAA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d00.GGR.Stanford_Snyder.RAMPAGE.b2.t1.AAGGAC-alignments/primary_keratinocyte-d00.GGR.Stanford_Snyder.RAMPAGE.b2.t1.AAGGAC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d00.b2.t1.AAGGAC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.GGR.Stanford_Snyder.RAMPAGE.b1.t1.CACTAC-alignments/primary_keratinocyte-d05.GGR.Stanford_Snyder.RAMPAGE.b1.t1.CACTAC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d05.b1.t1.CACTAC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d05.GGR.Stanford_Snyder.RAMPAGE.b2.t1.CGCGTT-alignments/primary_keratinocyte-d05.GGR.Stanford_Snyder.RAMPAGE.b2.t1.CGCGTT_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d05.b2.t1.CGCGTT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TTGGTC-alignments/primary_keratinocyte-d10.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TTGGTC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d10.b1.t1.TTGGTC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d10.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATGCGT-alignments/primary_keratinocyte-d10.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATGCGT_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d10.b2.t1.ATGCGT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GTGTCA-alignments/primary_keratinocyte-d15.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GTGTCA_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d15.b1.t1.GTGTCA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d15.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATAAGC-alignments/primary_keratinocyte-d15.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATAAGC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d15.b2.t1.ATAAGC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GCCGAA-alignments/primary_keratinocyte-d20.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GCCGAA_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d20.b1.t1.GCCGAA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d20.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATCTCC-alignments/primary_keratinocyte-d20.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATCTCC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d20.b2.t1.ATCTCC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TGATCA-alignments/primary_keratinocyte-d25.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TGATCA_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d25.b1.t1.TGATCA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d25.GGR.Stanford_Snyder.RAMPAGE.b2.t1.TAACTC-alignments/primary_keratinocyte-d25.GGR.Stanford_Snyder.RAMPAGE.b2.t1.TAACTC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d25.b2.t1.TAACTC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.GGR.Stanford_Snyder.RAMPAGE.b1.t1.CTGTAT-alignments/primary_keratinocyte-d30.GGR.Stanford_Snyder.RAMPAGE.b1.t1.CTGTAT_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d30.b1.t1.CTGTAT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d30.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATAGAG-alignments/primary_keratinocyte-d30.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ATAGAG_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d30.b2.t1.ATAGAG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.GGR.Stanford_Snyder.RAMPAGE.b1.t1.CGACTG-alignments/primary_keratinocyte-d35.GGR.Stanford_Snyder.RAMPAGE.b1.t1.CGACTG_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d35.b1.t1.CGACTG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d35.GGR.Stanford_Snyder.RAMPAGE.b2.t1.AGCCTA-alignments/primary_keratinocyte-d35.GGR.Stanford_Snyder.RAMPAGE.b2.t1.AGCCTA_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d35.b2.t1.AGCCTA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TTCCAG-alignments/primary_keratinocyte-d40.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TTCCAG_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d40.b1.t1.TTCCAG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d40.GGR.Stanford_Snyder.RAMPAGE.b2.t1.TGTAGT-alignments/primary_keratinocyte-d40.GGR.Stanford_Snyder.RAMPAGE.b2.t1.TGTAGT_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d40.b2.t1.TGTAGT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.GGR.Stanford_Snyder.RAMPAGE.b1.t1.ACTCTT-alignments/primary_keratinocyte-d45.GGR.Stanford_Snyder.RAMPAGE.b1.t1.ACTCTT_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d45.b1.t1.ACTCTT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d45.GGR.Stanford_Snyder.RAMPAGE.b2.t1.AAACGG-alignments/primary_keratinocyte-d45.GGR.Stanford_Snyder.RAMPAGE.b2.t1.AAACGG_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d45.b2.t1.AAACGG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GGATAC-alignments/primary_keratinocyte-d50.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GGATAC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d50.b1.t1.GGATAC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d50.GGR.Stanford_Snyder.RAMPAGE.b2.t1.CCTACG-alignments/primary_keratinocyte-d50.GGR.Stanford_Snyder.RAMPAGE.b2.t1.CCTACG_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d50.b2.t1.CCTACG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TTAACG-alignments/primary_keratinocyte-d55.GGR.Stanford_Snyder.RAMPAGE.b1.t1.TTAACG_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d55.b1.t1.TTAACG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d55.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ACTAGA-alignments/primary_keratinocyte-d55.GGR.Stanford_Snyder.RAMPAGE.b2.t1.ACTAGA_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d55.b2.t1.ACTAGA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GAGTGC-alignments/primary_keratinocyte-d60.GGR.Stanford_Snyder.RAMPAGE.b1.t1.GAGTGC_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d60.b1.t1.GAGTGC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RAMPAGE/primary_keratinocyte-d60.GGR.Stanford_Snyder.RAMPAGE.b2.t1.CCCTCT-alignments/primary_keratinocyte-d60.GGR.Stanford_Snyder.RAMPAGE.b2.t1.CCCTCT_Aligned.sortedByCoord.out.bam SAMstats-RAMPAGE-primary_keratinocyte-d60.b2.t1.CCCTCT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-polyA+/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_polyA.b1.t1.TGACCA-alignments/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_polyA.b1.t1.TGACCA_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-polyA+-primary_keratinocyte-d0.b1.t1.TGACCA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-polyA+/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_polyA.b2.t1.AGTTCC-alignments/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_polyA.b2.t1.AGTTCC_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-polyA+-primary_keratinocyte-d0.b2.t1.AGTTCC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-polyA+/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_polyA.b1.t1.CTTGTA-alignments/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_polyA.b1.t1.CTTGTA_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-polyA+-primary_keratinocyte-d3.b1.t1.CTTGTA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-polyA+/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_polyA.b2.t1.CCGTCC-alignments/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_polyA.b2.t1.CCGTCC_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-polyA+-primary_keratinocyte-d3.b2.t1.CCGTCC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-polyA+/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_polyA.b1.t1.AGTCAA-alignments/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_polyA.b1.t1.AGTCAA_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-polyA+-primary_keratinocyte-d6.b1.t1.AGTCAA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-polyA+/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_polyA.b2.t1.GTCCGC-alignments/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_polyA.b2.t1.GTCCGC_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-polyA+-primary_keratinocyte-d6.b2.t1.GTCCGC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_ribozero.b1.t1.CGATGT-alignments/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_ribozero.b1.t1.CGATGT_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-ribozero-primary_keratinocyte-d0.b1.t1.CGATGT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.ACAGTG-alignments/primary_keratinocyte-d0.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.ACAGTG_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-ribozero-primary_keratinocyte-d0.b2.t1.ACAGTG -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_ribozero.b1.t1.CAGATC-alignments/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_ribozero.b1.t1.CAGATC_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-ribozero-primary_keratinocyte-d3.b1.t1.CAGATC -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.GCCAAT-alignments/primary_keratinocyte-d3.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.GCCAAT_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-ribozero-primary_keratinocyte-d3.b2.t1.GCCAAT -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_ribozero.b1.t1.GTGAAA-alignments/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_ribozero.b1.t1.GTGAAA_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-ribozero-primary_keratinocyte-d6.b1.t1.GTGAAA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired
cd /users/marinovg/Skin_differentiation_project/2017-03-19-files-summary; python /users/marinovg/code/SAMstats.py /users/marinovg/Skin_differentiation_project/datasets/RNA-seq-ribozero/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.ATGTCA-alignments/primary_keratinocyte-d6.GGR.Stanford_Snyder.RNA-seq_ribozero.b2.t1.ATGTCA_Aligned.sortedByCoord.out.bam SAMstats-RNA-seq-ribozero-primary_keratinocyte-d6.b2.t1.ATGTCA -bam /users/marinovg/genomes/hg20/hg38.chrom.sizes samtools -noNHinfo -paired