#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
rpS3|P.biaurelia-Sample_379	rpS3|P.sexaurelia-Sample_130	0.173249	2.41434	0.0717583	366	83.9488	282.051	104	60.4438	43.5562
rpS3|P.biaurelia-Sample_379	rpS3|P.tetraurelia-Sample_291	0.126228	3.2348	0.0390218	372	74.6696	297.33	92	57.4786	34.5214
rpS3|P.biaurelia-Sample_379	rpS3|Sample_Peniche3I	0.650367	1.03933	0.625755	312	80.7607	231.239	136	38.5387	97.4613
rpS3|P.biaurelia-Sample_379	rpS3|P.multimicronucleatum-Sample_M04	0.631483	1.70255	0.370905	291	92.2219	198.778	127	45.2995	81.7005
rpS3|P.biaurelia-Sample_379	rpS3|Sample_C026	0.741218	0.275559	2.68987	309	86.9414	222.059	121	19.5181	101.482
rpS3|P.biaurelia-Sample_379	rpS3|P.octaurelia-Sample_1038	0.112029	2.0418	0.0548677	372	89.3375	282.663	92	62.5999	29.4001
rpS3|P.biaurelia-Sample_379	rpS3|P.caudatum-Sample_C104	0.431062	1.05301	0.40936	336	78.3758	257.624	128	44.3446	83.6554
rpS3|P.biaurelia-Sample_379	rpS3|Sample_M13	0.731425	0.681497	1.07326	309	103.003	205.997	133	39.822	93.178
rpS3|P.sexaurelia-Sample_130	rpS3|P.tetraurelia-Sample_291	0.180266	1.54587	0.116612	369	93.004	275.996	105	60.873	44.127
rpS3|P.sexaurelia-Sample_130	rpS3|Sample_Peniche3I	0.587282	0.72126	0.814245	342	109.145	232.855	136	44.4076	91.5924
rpS3|P.sexaurelia-Sample_130	rpS3|P.multimicronucleatum-Sample_M04	0.913511	0.711613	1.28372	369	112.25	256.75	177	45.6841	131.316
rpS3|P.sexaurelia-Sample_130	rpS3|Sample_C026	0.436326	1.41709	0.307902	372	92.276	279.724	139	47.4343	91.5657
rpS3|P.sexaurelia-Sample_130	rpS3|P.octaurelia-Sample_1038	0.202024	1.70779	0.118296	366	101.44	264.56	115	68.2755	46.7245
rpS3|P.sexaurelia-Sample_130	rpS3|P.caudatum-Sample_C104	0.404655	1.27731	0.316804	411	99.29	311.71	157	60.9053	96.0947
rpS3|P.sexaurelia-Sample_130	rpS3|Sample_M13	0.782267	0.610508	1.28134	369	115.735	253.265	161	43.4079	117.592
rpS3|P.tetraurelia-Sample_291	rpS3|Sample_Peniche3I	0.454373	1.4709	0.308908	309	81.1104	227.89	128	52.2743	75.7257
rpS3|P.tetraurelia-Sample_291	rpS3|P.multimicronucleatum-Sample_M04	0.743765	1.05393	0.705706	297	86.0472	210.953	135	39.5278	95.4722
rpS3|P.tetraurelia-Sample_291	rpS3|Sample_C026	0.660755	0.48182	1.37137	297	92.8407	204.159	116	29.9634	86.0366
rpS3|P.tetraurelia-Sample_291	rpS3|P.octaurelia-Sample_1038	0.0965079	1.05562	0.0914228	375	104.862	270.138	75	50.5691	24.4309
rpS3|P.tetraurelia-Sample_291	rpS3|P.caudatum-Sample_C104	0.45059	1.90362	0.236702	324	85.3026	238.697	125	45.5104	79.4896
rpS3|P.tetraurelia-Sample_291	rpS3|Sample_M13	0.756882	0.619384	1.22199	288	97.54	190.46	122	35.0512	86.9488
rpS3|Sample_Peniche3I	rpS3|P.multimicronucleatum-Sample_M04	0.123106	0.632011	0.194784	474	65.6691	408.331	73	26.9251	46.0749
rpS3|Sample_Peniche3I	rpS3|Sample_C026	0.284821	1.93918	0.146877	468	54.0432	413.957	131	33.7457	97.2543
rpS3|Sample_Peniche3I	rpS3|P.octaurelia-Sample_1038	0.418541	1.48476	0.281892	303	74.4757	228.524	120	48.1422	71.8578
rpS3|Sample_Peniche3I	rpS3|P.caudatum-Sample_C104	0.313814	0.768076	0.408572	450	79.3343	370.666	129	35.1316	93.8684
rpS3|Sample_Peniche3I	rpS3|Sample_M13	0.0498131	0.806591	0.0617576	498	57.7521	440.248	45	23.8565	21.1435
rpS3|P.multimicronucleatum-Sample_M04	rpS3|Sample_C026	0.293917	1.36817	0.214825	462	51.4541	410.546	127	28.263	98.737
rpS3|P.multimicronucleatum-Sample_M04	rpS3|P.octaurelia-Sample_1038	0.727371	0.669076	1.08713	300	74.1621	225.838	132	30.6428	101.357
rpS3|P.multimicronucleatum-Sample_M04	rpS3|P.caudatum-Sample_C104	0.273479	1.0829	0.252543	429	69.1766	359.823	116	34.6144	81.3856
rpS3|P.multimicronucleatum-Sample_M04	rpS3|Sample_M13	0.145716	1.81612	0.0802348	486	45.1014	440.899	84	25.9525	58.0475
rpS3|Sample_C026	rpS3|P.octaurelia-Sample_1038	0.625628	0.391489	1.59807	309	91.4025	217.597	115	26.4879	88.5121
rpS3|Sample_C026	rpS3|P.caudatum-Sample_C104	0.226858	1.10713	0.204906	1020	152.216	867.784	246	77.4354	168.565
rpS3|Sample_C026	rpS3|Sample_M13	0.32034	1.17626	0.272337	468	47.6648	420.335	136	27.2239	108.776
rpS3|P.octaurelia-Sample_1038	rpS3|P.caudatum-Sample_C104	0.44841	0.9843	0.455562	348	93.2955	254.705	136	51.1371	84.8629
rpS3|P.octaurelia-Sample_1038	rpS3|Sample_M13	0.759763	0.607129	1.2514	315	84.9578	230.042	137	32.1207	104.879
rpS3|P.caudatum-Sample_C104	rpS3|Sample_M13	0.310545	2.1983	0.141266	474	62.1269	411.873	144	40.098	103.902
#Average Ka: 0.43301075
#Average Ks: 1.22364147222
#Average KaKs: 0.560054777778