#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh4|Sample_M13	nadh4|P.multimicronucleatum-Sample_M04	0.0422295	2.13356	0.019793	1599	173.543	1425.46	181	122.589	58.4113
nadh4|Sample_M13	nadh4|P.tetraurelia-Sample_291	0.20079	4.38903	0.0457482	1554	347.944	1206.06	515	303.592	211.408
nadh4|Sample_M13	nadh4|P.biaurelia-Sample_379	0.381086	0.378565	1.00666	1338	357.918	980.082	385	100.093	284.907
nadh4|Sample_M13	nadh4|P.caudatum-Sample_C104	0.238108	0.193392	1.23122	1302	296.958	1005.04	252	49.2336	202.766
nadh4|Sample_M13	nadh4|Sample_C026	0.280498	0.11012	2.5472	1407	365.954	1041.05	276	36.6141	239.386
nadh4|Sample_M13	nadh4|P.sexaurelia-Sample_130	0.390296	0.370568	1.05324	1332	344.443	987.557	387	93.3345	293.665
nadh4|Sample_M13	nadh4|P.octaurelia-Sample_1038	0.154519	4.36524	0.0353976	1545	337.08	1207.92	448	280.143	167.857
nadh4|Sample_M13	nadh4|Sample_Peniche3I	0.00978725	0.849322	0.0115236	1536	198.428	1337.57	99	86	13
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.tetraurelia-Sample_291	0.522434	0.282366	1.8502	1359	380.892	978.108	439	85.4327	353.567
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.biaurelia-Sample_379	0.138083	4.31663	0.0319887	1536	315.925	1220.08	436	282.891	153.109
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.caudatum-Sample_C104	0.273306	0.0977336	2.79644	1398	342.236	1055.76	268	30.6148	237.385
nadh4|P.multimicronucleatum-Sample_M04	nadh4|Sample_C026	0.125992	3.8272	0.0329201	1518	164.504	1353.5	303	146.895	156.105
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.sexaurelia-Sample_130	0.141867	4.2967	0.0330177	1536	307.642	1228.36	436	277.935	158.065
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.octaurelia-Sample_1038	0.145126	4.32811	0.033531	1545	320.799	1224.2	445	284.246	160.754
nadh4|P.multimicronucleatum-Sample_M04	nadh4|Sample_Peniche3I	0.0379089	3.81072	0.00994796	1536	160.928	1375.07	182	131.271	50.7286
nadh4|P.tetraurelia-Sample_291	nadh4|P.biaurelia-Sample_379	0.155624	1.53659	0.101279	1548	459.373	1088.63	413	260.938	152.062
nadh4|P.tetraurelia-Sample_291	nadh4|P.caudatum-Sample_C104	0.473899	0.336388	1.40879	1311	351.138	959.862	416	89.4373	326.563
nadh4|P.tetraurelia-Sample_291	nadh4|Sample_C026	0.18101	4.42504	0.0409058	1521	365.056	1155.94	477	292.123	184.877
nadh4|P.tetraurelia-Sample_291	nadh4|P.sexaurelia-Sample_130	0.154453	1.53587	0.100564	1548	441.023	1106.98	442	288.093	153.907
nadh4|P.tetraurelia-Sample_291	nadh4|P.octaurelia-Sample_1038	0.136342	1.20779	0.112886	1548	458.084	1089.92	372	236.877	135.123
nadh4|P.tetraurelia-Sample_291	nadh4|Sample_Peniche3I	0.214744	4.37147	0.0491238	1530	339.893	1190.11	511	289.896	221.104
nadh4|P.biaurelia-Sample_379	nadh4|P.caudatum-Sample_C104	0.117569	4.3426	0.0270735	1533	327.055	1205.94	407	276.344	130.656
nadh4|P.biaurelia-Sample_379	nadh4|Sample_C026	0.436632	0.160523	2.72006	1428	355.248	1072.75	395	50.0078	344.992
nadh4|P.biaurelia-Sample_379	nadh4|P.sexaurelia-Sample_130	0.0660752	1.35209	0.048869	1551	449.347	1101.65	351	281.458	69.5423
nadh4|P.biaurelia-Sample_379	nadh4|P.octaurelia-Sample_1038	0.0457952	1.05332	0.0434772	1551	479.593	1071.41	290	242.526	47.4742
nadh4|P.biaurelia-Sample_379	nadh4|Sample_Peniche3I	0.386068	0.344349	1.12115	1335	369.291	965.709	378	95.9046	282.095
nadh4|P.caudatum-Sample_C104	nadh4|Sample_C026	0.0101295	1.46736	0.00690321	1536	230.473	1305.53	145	131.884	13.1164
nadh4|P.caudatum-Sample_C104	nadh4|P.sexaurelia-Sample_130	0.372018	0.244065	1.52426	1332	328.556	1003.44	353	65.342	287.658
nadh4|P.caudatum-Sample_C104	nadh4|P.octaurelia-Sample_1038	0.448146	0.0906281	4.94489	1407	354.096	1052.9	375	29.7643	345.236
nadh4|P.caudatum-Sample_C104	nadh4|Sample_Peniche3I	0.247485	0.199289	1.24184	1311	290.824	1020.18	262	49.5279	212.472
nadh4|Sample_C026	nadh4|P.sexaurelia-Sample_130	0.106466	4.24477	0.0250817	1536	287.062	1248.94	397	273.542	123.458
nadh4|Sample_C026	nadh4|P.octaurelia-Sample_1038	0.469332	0.0883349	5.3131	1404	360.7	1043.3	382	29.641	352.359
nadh4|Sample_C026	nadh4|Sample_Peniche3I	0.29554	0.0975387	3.02997	1422	373.229	1048.77	285	33.4379	251.562
nadh4|P.sexaurelia-Sample_130	nadh4|P.octaurelia-Sample_1038	0.0642946	1.60759	0.0399945	1551	448.932	1102.07	365	297.221	67.7789
nadh4|P.sexaurelia-Sample_130	nadh4|Sample_Peniche3I	0.512828	0.121023	4.23744	1395	384.572	1010.43	404	41.7218	362.278
nadh4|P.octaurelia-Sample_1038	nadh4|Sample_Peniche3I	0.142301	4.34231	0.0327708	1527	326.931	1200.07	424	269.254	154.746
#Average Ka: 0.225521726389
#Average Ks: 1.85883875833
#Average KaKs: 1.02525712139