#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.caudatum-Sample_C104	0.0950245	4.06341	0.0233854	954	225.4	728.6	241	176.172	64.8275
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.multimicronucleatum-Sample_M04	0.361786	0.219604	1.64744	831	236.478	594.522	209	42.7394	166.261
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.sexaurelia-Sample_130	0.073119	1.28593	0.0568606	1008	326.454	681.546	226	178.739	47.2611
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.biaurelia-Sample_379	0.0697076	0.922387	0.075573	984	340.988	643.012	209	166.51	42.4899
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|Sample_Peniche3I	0.0971236	4.01643	0.0241816	957	211.715	745.285	260	192.29	67.7102
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|Sample_M13	0.125354	4.06823	0.030813	987	226.853	760.147	269	181.652	87.3479
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|Sample_C026	0.37754	0.230451	1.63827	867	242.164	624.836	226	45.4191	180.581
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.tetraurelia-Sample_291	0.0879299	0.773767	0.113639	1008	351.013	656.987	212	157.884	54.1161
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.multimicronucleatum-Sample_M04	0.245954	0.177393	1.38649	831	208.416	622.584	161	31.8954	129.105
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.sexaurelia-Sample_130	0.070138	3.98033	0.0176211	951	201.767	749.233	236	185.912	50.0884
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.biaurelia-Sample_379	0.0623402	4.0648	0.0153366	921	225.819	695.181	231	189.489	41.5107
nadh1_a|P.caudatum-Sample_C104	nadh1_a|Sample_Peniche3I	0.0840079	99	0.000848565	951	110.518	840.482	183	116.417	66.5834
nadh1_a|P.caudatum-Sample_C104	nadh1_a|Sample_M13	0.208874	0.15534	1.34462	816	189.062	626.938	139	25.9245	113.075
nadh1_a|P.caudatum-Sample_C104	nadh1_a|Sample_C026	0.0295219	3.59686	0.00820769	969	131.455	837.545	122	97.7765	24.2235
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.tetraurelia-Sample_291	0.086465	4.10062	0.0210858	939	236.867	702.133	252	194.761	57.2392
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|P.sexaurelia-Sample_130	0.112582	4.01956	0.0280085	966	212.599	753.401	261	182.431	78.5687
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|P.biaurelia-Sample_379	0.371282	0.191005	1.94383	816	234.374	581.626	204	37.9323	166.068
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|Sample_Peniche3I	0.026937	3.50284	0.00769007	972	106.745	865.255	119	96.1283	22.8717
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|Sample_M13	0.029097	3.58733	0.00811106	972	119.475	852.525	118	93.6926	24.3074
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|Sample_C026	0.269255	0.0343594	7.83642	870	245.454	624.546	147	8.17857	138.821
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|P.tetraurelia-Sample_291	0.472923	0.11827	3.99868	912	231.922	680.078	256	25.0531	230.947
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|P.biaurelia-Sample_379	0.0645178	1.67398	0.0385415	981	288.75	692.25	213	170.279	42.7213
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|Sample_Peniche3I	0.408682	0.0901118	4.53527	912	237.975	674.025	227	19.9945	207.005
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|Sample_M13	0.115386	4.00643	0.0288001	981	208.91	772.09	257	174.612	82.388
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|Sample_C026	0.324378	0.222646	1.45693	873	250.249	622.751	205	45.4515	159.548
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|P.tetraurelia-Sample_291	0.0906958	3.22936	0.0280848	999	318.855	680.145	252	194.106	57.8941
nadh1_a|P.biaurelia-Sample_379	nadh1_a|Sample_Peniche3I	0.469482	0.118526	3.96101	924	231.297	692.703	260	24.7946	235.205
nadh1_a|P.biaurelia-Sample_379	nadh1_a|Sample_M13	0.0940996	4.07299	0.0231033	939	228.297	710.703	251	188.365	62.6349
nadh1_a|P.biaurelia-Sample_379	nadh1_a|Sample_C026	0.0768821	3.99291	0.0192546	951	205.179	745.821	234	179.609	54.3908
nadh1_a|P.biaurelia-Sample_379	nadh1_a|P.tetraurelia-Sample_291	0.0763361	1.09304	0.0698385	981	332.024	648.976	219	172.056	46.9437
nadh1_a|Sample_Peniche3I	nadh1_a|Sample_M13	0.0872625	0.0212598	4.10458	864	286.98	577.02	53	6.01547	46.9845
nadh1_a|Sample_Peniche3I	nadh1_a|Sample_C026	0.216674	0.176785	1.22564	810	185.977	624.023	144	28	116
nadh1_a|Sample_Peniche3I	nadh1_a|P.tetraurelia-Sample_291	0.497893	0.101635	4.89884	915	234.683	680.317	261	22.002	238.998
nadh1_a|Sample_M13	nadh1_a|Sample_C026	0.236424	0.171264	1.38047	837	196.564	640.436	157	28.8991	128.101
nadh1_a|Sample_M13	nadh1_a|P.tetraurelia-Sample_291	0.490841	0.127038	3.86373	921	241.012	679.988	265	27.6535	237.346
nadh1_a|Sample_C026	nadh1_a|P.tetraurelia-Sample_291	0.0941413	2.51447	0.0374398	969	276.177	692.823	261	199.885	61.1151
#Average Ka: 0.186129355556
#Average Ks: 4.54781561111
#Average KaKs: 1.27496234958