#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_127	0.000669021	0.236482	0.00282906	2187	691.202	1495.8	133	132	1.00005
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_126	NA	NA	NA	2187	538.587	1648.41	0	NA	NA
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_137	0.000668118	0.225967	0.00295671	2187	689.176	1497.82	128	127	1.00005
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_130	0.000669108	0.229549	0.00291488	2187	691.394	1495.61	130	129	1.00005
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_131	0.00126071	0.28835	0.00437215	2187	599.11	1587.89	135	133	2.00012
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_132	0.017728	0.651407	0.0272149	2187	696.044	1490.96	292	265.934	26.066
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_133	0.017728	0.651407	0.0272149	2187	696.044	1490.96	292	265.934	26.066
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_134	0.00133909	0.229594	0.00583242	2187	691.287	1495.71	131	129	2.0002
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_128	NA	0.0343154	-0	2187	536.638	1650.36	18	18	NA
cox1|P.sexaurelia-Sample_Indo1-7I	cox1|P.sexaurelia-Sample_Moz13BIII	0.00265239	0.163383	0.0162342	2187	675.725	1511.27	99	95	4
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_126	0.000669021	0.236482	0.00282906	2187	691.202	1495.8	133	132	1.00005
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_137	NA	0.012977	-0	2187	544.095	1642.91	7	7	NA
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_130	NA	0.0167303	-0	2187	543.968	1643.03	9	9	NA
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_131	0.000609071	0.00553101	0.110119	2187	544.399	1642.6	4	3	1
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_132	0.0170724	0.601836	0.0283672	2187	698.483	1488.52	281	255.923	25.0766
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_133	0.0170724	0.601836	0.0283672	2187	698.483	1488.52	281	255.923	25.0766
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_134	0.000608924	0.0167264	0.0364049	2187	544.093	1642.91	10	9	1
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_128	0.000669712	0.231241	0.00289616	2187	692.742	1494.26	131	130	1.00005
cox1|P.sexaurelia-Sample_127	cox1|P.sexaurelia-Sample_Moz13BIII	0.00337928	0.183643	0.0184014	2187	702.413	1484.59	114	108.997	5.00276
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_137	0.000668118	0.225967	0.00295671	2187	689.176	1497.82	128	127	1.00005
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_130	0.000669108	0.229549	0.00291488	2187	691.394	1495.61	130	129	1.00005
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_131	0.00126071	0.28835	0.00437215	2187	599.11	1587.89	135	133	2.00012
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_132	0.017728	0.651407	0.0272149	2187	696.044	1490.96	292	265.934	26.066
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_133	0.017728	0.651407	0.0272149	2187	696.044	1490.96	292	265.934	26.066
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_134	0.00133909	0.229594	0.00583242	2187	691.287	1495.71	131	129	2.0002
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_128	NA	0.0343154	-0	2187	536.638	1650.36	18	18	NA
cox1|P.sexaurelia-Sample_126	cox1|P.sexaurelia-Sample_Moz13BIII	0.00265239	0.163383	0.0162342	2187	675.725	1511.27	99	95	4
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_130	NA	0.00738846	-0	2187	544.056	1642.94	4	4	NA
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_131	0.000609108	0.0148383	0.0410498	2187	544.498	1642.5	9	8	1
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_132	0.0170647	0.598254	0.0285241	2187	697.799	1489.2	280	254.923	25.0769
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_133	0.0170647	0.598254	0.0285241	2187	697.799	1489.2	280	254.923	25.0769
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_134	0.000608957	0.00738674	0.0824393	2187	544.182	1642.82	5	4	1
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_128	0.000668836	0.22082	0.00302887	2187	690.782	1496.22	126	125	1.00005
cox1|P.sexaurelia-Sample_137	cox1|P.sexaurelia-Sample_Moz13BIII	0.00337956	0.181564	0.0186136	2187	702.523	1484.48	113	107.997	5.00279
cox1|P.sexaurelia-Sample_130	cox1|P.sexaurelia-Sample_131	0.000609059	0.0185987	0.0327474	2187	544.367	1642.63	11	10	1
cox1|P.sexaurelia-Sample_130	cox1|P.sexaurelia-Sample_132	0.0170659	0.598079	0.0285345	2187	697.874	1489.13	280	254.923	25.0773
cox1|P.sexaurelia-Sample_130	cox1|P.sexaurelia-Sample_133	0.0170659	0.598079	0.0285345	2187	697.874	1489.13	280	254.923	25.0773
cox1|P.sexaurelia-Sample_130	cox1|P.sexaurelia-Sample_134	0.000608909	NA	NA	2187	544.051	1642.95	1	NA	1
cox1|P.sexaurelia-Sample_130	cox1|P.sexaurelia-Sample_128	0.000669749	0.224446	0.00298401	2187	692.822	1494.18	128	127	1.00005
cox1|P.sexaurelia-Sample_130	cox1|P.sexaurelia-Sample_Moz13BIII	0.00338043	0.181445	0.0186305	2187	702.896	1484.1	113	107.997	5.00281
cox1|P.sexaurelia-Sample_131	cox1|P.sexaurelia-Sample_132	0.0175762	0.632599	0.0277841	2187	683.297	1503.7	283	256.923	26.0765
cox1|P.sexaurelia-Sample_131	cox1|P.sexaurelia-Sample_133	0.0175762	0.632599	0.0277841	2187	683.297	1503.7	283	256.923	26.0765
cox1|P.sexaurelia-Sample_131	cox1|P.sexaurelia-Sample_134	0.00122387	0.0183566	0.0666722	2187	551.458	1635.54	12	10	2
cox1|P.sexaurelia-Sample_131	cox1|P.sexaurelia-Sample_128	0.00126148	0.281835	0.00447596	2187	600.082	1586.92	133	131	2.00013
cox1|P.sexaurelia-Sample_131	cox1|P.sexaurelia-Sample_Moz13BIII	0.00394453	0.200142	0.0197087	2187	660.563	1526.44	116	109.997	6.00323
cox1|P.sexaurelia-Sample_132	cox1|P.sexaurelia-Sample_133	NA	NA	NA	2217	544.4	1672.6	0	NA	NA
cox1|P.sexaurelia-Sample_132	cox1|P.sexaurelia-Sample_134	0.0178045	0.592323	0.0300588	2187	701.492	1485.51	281	254.919	26.0813
cox1|P.sexaurelia-Sample_132	cox1|P.sexaurelia-Sample_128	0.0176859	0.67848	0.0260669	2187	692.61	1494.39	296	269.935	26.0649
cox1|P.sexaurelia-Sample_132	cox1|P.sexaurelia-Sample_Moz13BIII	0.0160363	0.67626	0.0237132	2187	668.5	1518.5	284	259.941	24.0593
cox1|P.sexaurelia-Sample_133	cox1|P.sexaurelia-Sample_134	0.0178045	0.592323	0.0300588	2187	701.492	1485.51	281	254.919	26.0813
cox1|P.sexaurelia-Sample_133	cox1|P.sexaurelia-Sample_128	0.0176859	0.67848	0.0260669	2187	692.61	1494.39	296	269.935	26.0649
cox1|P.sexaurelia-Sample_133	cox1|P.sexaurelia-Sample_Moz13BIII	0.0160363	0.67626	0.0237132	2187	668.5	1518.5	284	259.941	24.0593
cox1|P.sexaurelia-Sample_134	cox1|P.sexaurelia-Sample_128	0.00134037	0.224493	0.00597063	2187	692.707	1494.29	129	127	2.00021
cox1|P.sexaurelia-Sample_134	cox1|P.sexaurelia-Sample_Moz13BIII	0.00409369	0.177719	0.0230347	2187	715.14	1471.86	114	107.996	6.00428
cox1|P.sexaurelia-Sample_128	cox1|P.sexaurelia-Sample_Moz13BIII	0.00264835	0.164033	0.0161452	2187	673.423	1513.58	99	95	4
#Average Ka: 0.00756905638298
#Average Ks: 0.350228909574
#Average KaKs: 0.0227352844681