#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cob|P.sexaurelia-Sample_130	cob|P.biaurelia-Sample_379	0.0270292	1.02081	0.0264781	1326	412.803	913.197	228	203.814	24.1864
cob|P.sexaurelia-Sample_130	cob|P.tetraurelia-Sample_291	0.028324	1.46218	0.0193711	1326	381.334	944.666	235	208.78	26.22
cob|P.sexaurelia-Sample_130	cob|Sample_Peniche3I	0.0927729	4.45863	0.0208075	1326	381.778	944.222	396	313.96	82.0398
cob|P.sexaurelia-Sample_130	cob|P.multimicronucleatum-Sample_M04	0.498493	0.212375	2.34723	1179	333.603	845.397	350	58.2212	291.779
cob|P.sexaurelia-Sample_130	cob|Sample_C026	0.208071	0.881439	0.236059	1263	383.601	879.399	336	179.191	156.809
cob|P.sexaurelia-Sample_130	cob|P.caudatum-Sample_C104	0.204763	0.904597	0.226359	1272	390.927	881.073	337	181.96	155.04
cob|P.sexaurelia-Sample_130	cob|P.octaurelia-Sample_1038	0.016058	1.50894	0.0106418	1326	374.413	951.587	224	208.891	15.1095
cob|P.sexaurelia-Sample_130	cob|Sample_M13	0.0948744	4.46424	0.0212521	1326	384.647	941.353	393	309.504	83.4955
cob|P.biaurelia-Sample_379	cob|P.tetraurelia-Sample_291	0.0343675	1.02746	0.0334489	1326	421.149	904.851	235	204.714	30.286
cob|P.biaurelia-Sample_379	cob|Sample_Peniche3I	0.0824287	4.45524	0.0185015	1317	380.055	936.945	364	291.186	72.814
cob|P.biaurelia-Sample_379	cob|P.multimicronucleatum-Sample_M04	0.50322	0.184544	2.72683	1200	349.008	850.992	351	54.4215	296.578
cob|P.biaurelia-Sample_379	cob|Sample_C026	0.0512804	4.35136	0.0117849	1326	330.899	995.101	352	302.732	49.2678
cob|P.biaurelia-Sample_379	cob|P.caudatum-Sample_C104	0.0488574	4.38853	0.011133	1326	347.713	978.287	347	300.776	46.224
cob|P.biaurelia-Sample_379	cob|P.octaurelia-Sample_1038	0.0228121	1.06024	0.021516	1326	430.106	895.894	233	212.907	20.0931
cob|P.biaurelia-Sample_379	cob|Sample_M13	0.0857801	4.45388	0.0192596	1317	379.367	937.633	369	293.352	75.6483
cob|P.tetraurelia-Sample_291	cob|Sample_Peniche3I	0.100185	4.45606	0.0224829	1326	380.47	945.53	412	323.78	88.2199
cob|P.tetraurelia-Sample_291	cob|P.multimicronucleatum-Sample_M04	0.453725	0.348138	1.30329	1221	372.166	848.834	372	96.6831	275.317
cob|P.tetraurelia-Sample_291	cob|Sample_C026	0.0518433	4.32893	0.011976	1326	321.148	1004.85	371	320.722	50.2776
cob|P.tetraurelia-Sample_291	cob|P.caudatum-Sample_C104	0.0507767	4.37443	0.0116076	1326	341.234	984.766	365	316.701	48.2988
cob|P.tetraurelia-Sample_291	cob|P.octaurelia-Sample_1038	0.0296716	0.758148	0.039137	1326	426.461	899.539	208	181.909	26.0913
cob|P.tetraurelia-Sample_291	cob|Sample_M13	0.101879	4.47419	0.0227704	1326	389.781	936.219	406	317.28	88.7204
cob|Sample_Peniche3I	cob|P.multimicronucleatum-Sample_M04	0.016067	3.66153	0.00438804	1332	131.9	1200.1	124	104.935	19.0654
cob|Sample_Peniche3I	cob|Sample_C026	0.0639068	3.80948	0.0167758	1329	160.662	1168.34	207	135.583	71.417
cob|Sample_Peniche3I	cob|P.caudatum-Sample_C104	0.0653995	4.11389	0.0158972	1326	174.081	1151.92	202	130.019	71.9807
cob|Sample_Peniche3I	cob|P.octaurelia-Sample_1038	0.0841878	4.43913	0.018965	1326	371.978	954.022	374	298.38	75.6201
cob|Sample_Peniche3I	cob|Sample_M13	0.00523829	0.731132	0.00716464	1332	180.448	1151.55	79	72.9961	6.00391
cob|P.multimicronucleatum-Sample_M04	cob|Sample_C026	0.0703167	3.66509	0.0191855	1332	132.528	1199.47	204	123.696	80.304
cob|P.multimicronucleatum-Sample_M04	cob|P.caudatum-Sample_C104	0.0716653	3.74512	0.0191356	1329	147.451	1181.55	208	127.436	80.5636
cob|P.multimicronucleatum-Sample_M04	cob|P.octaurelia-Sample_1038	0.128286	1.84417	0.0695629	1290	374.756	915.244	364	257.027	106.973
cob|P.multimicronucleatum-Sample_M04	cob|Sample_M13	0.016254	2.02908	0.00801056	1332	145.655	1186.35	121	101.939	19.0608
cob|Sample_C026	cob|P.caudatum-Sample_C104	0.00815618	1.83529	0.00444409	1362	128.448	1233.55	98	87.9983	10.0017
cob|Sample_C026	cob|P.octaurelia-Sample_1038	0.0451765	4.28926	0.0105325	1326	304.605	1021.4	344	299.256	44.7437
cob|Sample_C026	cob|Sample_M13	0.066654	3.84276	0.0173454	1332	167.951	1164.05	209	134.911	74.0893
cob|P.caudatum-Sample_C104	cob|P.octaurelia-Sample_1038	0.0449161	4.3247	0.0103859	1326	319.345	1006.65	346	302.152	43.8479
cob|P.caudatum-Sample_C104	cob|Sample_M13	0.0645101	3.15837	0.0204251	1323	182.199	1140.8	205	134.623	70.3773
cob|P.octaurelia-Sample_1038	cob|Sample_M13	0.0854627	4.44343	0.0192335	1326	374.12	951.88	373	296.479	76.5211
#Average Ka: 0.1006502575
#Average Ks: 2.87518869444
#Average KaKs: 0.206205225833