#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf84|Sample_Peniche3I	Ymf84|P.tetraurelia-Sample_291	0.736617	1.1655	0.632021	492	123.924	368.076	233	63.7396	169.26
Ymf84|Sample_Peniche3I	Ymf84|P.multimicronucleatum-Sample_M04	0.188269	2.70011	0.0697263	564	54.308	509.692	119	34.7133	84.2867
Ymf84|Sample_Peniche3I	Ymf84|P.caudatum-Sample_C104	0.479489	0.302975	1.5826	429	93.4956	335.504	139	22.38	116.62
Ymf84|Sample_Peniche3I	Ymf84|P.sexaurelia-Sample_130	0.769529	0.932113	0.825575	486	106.474	379.526	231	52.3285	178.671
Ymf84|Sample_Peniche3I	Ymf84|P.biaurelia-Sample_379	0.968985	0.54343	1.78309	453	125.257	327.743	219	45.7479	173.252
Ymf84|Sample_Peniche3I	Ymf84|Sample_C026	0.327187	1.5964	0.204954	459	61.0873	397.913	139	34.8126	104.187
Ymf84|Sample_Peniche3I	Ymf84|Sample_M13	0.0404982	0.521152	0.0777091	564	69.3177	494.682	44	24.5701	19.4299
Ymf84|Sample_Peniche3I	Ymf84|P.octaurelia-Sample_1038	0.790555	0.575504	1.37367	420	109.428	310.572	186	39.2821	146.718
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.multimicronucleatum-Sample_M04	0.716254	1.19765	0.598049	501	120.095	380.905	242	71.829	170.171
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.caudatum-Sample_C104	0.598792	1.23816	0.483615	471	110.613	360.387	212	67.0414	144.959
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.sexaurelia-Sample_130	0.208568	2.63022	0.0792966	555	135.895	419.105	175	98.8648	76.1352
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.biaurelia-Sample_379	0.179281	2.4172	0.074169	540	136.622	403.378	146	82.3395	63.6605
Ymf84|P.tetraurelia-Sample_291	Ymf84|Sample_C026	0.756066	0.856646	0.882588	483	143.028	339.972	220	63.1163	156.884
Ymf84|P.tetraurelia-Sample_291	Ymf84|Sample_M13	0.85536	0.589915	1.44997	456	130.118	325.882	210	48.6397	161.36
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.octaurelia-Sample_1038	0.118375	2.12785	0.0556314	555	152.489	402.511	131	87.1263	43.8737
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.caudatum-Sample_C104	0.353711	0.518599	0.682051	456	73.5397	382.46	133	26.6897	106.31
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.sexaurelia-Sample_130	0.663282	1.42805	0.464468	462	102.203	359.797	209	53.298	155.702
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.biaurelia-Sample_379	0.894434	0.678311	1.31862	465	121.545	343.455	224	50.0457	173.954
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|Sample_C026	0.312553	0.898704	0.347782	471	46.8245	424.176	128	20.9203	107.08
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|Sample_M13	0.179566	2.96047	0.0606546	564	51.7952	512.205	121	39.7016	81.2984
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.octaurelia-Sample_1038	0.819194	0.545934	1.50054	477	136.174	340.826	215	48.8804	166.12
Ymf84|P.caudatum-Sample_C104	Ymf84|P.sexaurelia-Sample_130	0.887035	0.44252	2.00451	465	107.907	357.093	216	35.1592	180.841
Ymf84|P.caudatum-Sample_C104	Ymf84|P.biaurelia-Sample_379	0.854994	0.613938	1.39264	465	121.456	343.544	216	45.432	170.568
Ymf84|P.caudatum-Sample_C104	Ymf84|Sample_C026	0.157542	1.37621	0.114476	555	68.7107	486.289	112	43.3072	68.6928
Ymf84|P.caudatum-Sample_C104	Ymf84|Sample_M13	0.373545	0.542144	0.689014	474	78.8153	395.185	143	28.6122	114.388
Ymf84|P.caudatum-Sample_C104	Ymf84|P.octaurelia-Sample_1038	0.772042	0.66296	1.16454	468	118.603	349.397	213	47.1461	165.854
Ymf84|P.sexaurelia-Sample_130	Ymf84|P.biaurelia-Sample_379	0.225405	0.596197	0.378071	534	146.086	387.914	132	57.4911	74.5089
Ymf84|P.sexaurelia-Sample_130	Ymf84|Sample_C026	0.778395	0.437427	1.77948	480	122.754	357.246	206	38.7342	167.266
Ymf84|P.sexaurelia-Sample_130	Ymf84|Sample_M13	0.747423	0.805069	0.928397	489	127.298	361.702	226	57.4829	168.517
Ymf84|P.sexaurelia-Sample_130	Ymf84|P.octaurelia-Sample_1038	0.186539	1.76477	0.105701	534	139.626	394.374	145	80.0875	64.9125
Ymf84|P.biaurelia-Sample_379	Ymf84|Sample_C026	0.62797	1.09828	0.571774	441	115.566	325.434	192	57.2116	134.788
Ymf84|P.biaurelia-Sample_379	Ymf84|Sample_M13	0.573716	3.39308	0.169084	468	92.2138	375.786	223	75.1771	147.823
Ymf84|P.biaurelia-Sample_379	Ymf84|P.octaurelia-Sample_1038	0.191453	2.57067	0.0744758	534	143.912	390.088	150	84.9739	65.0261
Ymf84|Sample_C026	Ymf84|Sample_M13	0.402268	0.306601	1.31203	420	101.253	318.747	122	24.243	97.757
Ymf84|Sample_C026	Ymf84|P.octaurelia-Sample_1038	0.67166	0.973617	0.68986	465	117.18	347.82	208	56.4132	151.587
Ymf84|Sample_M13	Ymf84|P.octaurelia-Sample_1038	0.581479	1.6794	0.346241	468	98.1938	369.806	213	65.7989	147.201
#Average Ka: 0.527445311111
#Average Ks: 1.21354933333
#Average KaKs: 0.729640938889