#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf79|Sample_Peniche3I	Ymf79|P.tetraurelia-Sample_291	0.645982	0.327928	1.96989	177	75.881	101.119	62	18.8323	43.1677
Ymf79|Sample_Peniche3I	Ymf79|P.multimicronucleatum-Sample_M04	0.117645	0.258294	0.455469	282	53.3569	228.643	36	11.3653	24.6347
Ymf79|Sample_Peniche3I	Ymf79|P.caudatum-Sample_C104	0.321027	0.796765	0.402913	198	33.5642	164.436	57	15.4293	41.5707
Ymf79|Sample_Peniche3I	Ymf79|P.sexaurelia-Sample_130	0.456577	0.674167	0.677246	198	73.0561	124.944	71	29.5476	41.4524
Ymf79|Sample_Peniche3I	Ymf79|P.biaurelia-Sample_379	0.492934	0.694499	0.709768	198	53.1888	144.811	72	21.0534	50.9466
Ymf79|Sample_Peniche3I	Ymf79|Sample_C026	0.302178	0.59907	0.504413	201	45.1557	155.844	55	17.2451	37.7549
Ymf79|Sample_Peniche3I	Ymf79|Sample_M13	0.123362	0.221307	0.557425	234	58.0226	175.977	30	10.1683	19.8317
Ymf79|Sample_Peniche3I	Ymf79|P.octaurelia-Sample_1038	0.563205	0.759736	0.741317	198	69.2125	128.787	78	28.392	49.608
Ymf79|P.tetraurelia-Sample_291	Ymf79|P.multimicronucleatum-Sample_M04	0.513716	1.33817	0.383893	204	63.4504	140.55	82	31.2236	50.7764
Ymf79|P.tetraurelia-Sample_291	Ymf79|P.caudatum-Sample_C104	0.442782	1.58239	0.279818	207	52.477	154.523	85	34.5854	50.4146
Ymf79|P.tetraurelia-Sample_291	Ymf79|P.sexaurelia-Sample_130	0.0810343	2.95158	0.0274545	210	51.1848	158.815	52	39.8351	12.1649
Ymf79|P.tetraurelia-Sample_291	Ymf79|P.biaurelia-Sample_379	0.126941	1.37015	0.0926475	210	61.451	148.549	50	32.7394	17.2606
Ymf79|P.tetraurelia-Sample_291	Ymf79|Sample_C026	0.532885	0.42182	1.2633	162	35.0864	126.914	58	10.5957	47.4043
Ymf79|P.tetraurelia-Sample_291	Ymf79|Sample_M13	0.657079	0.421779	1.55787	183	70.816	112.184	69	21.2247	47.7753
Ymf79|P.tetraurelia-Sample_291	Ymf79|P.octaurelia-Sample_1038	0.0321663	0.536396	0.0599674	210	51.0392	158.961	23	18	5
Ymf79|P.multimicronucleatum-Sample_M04	Ymf79|P.caudatum-Sample_C104	0.311274	0.547873	0.568149	153	23.1187	129.881	40	8.23149	31.7685
Ymf79|P.multimicronucleatum-Sample_M04	Ymf79|P.sexaurelia-Sample_130	0.413123	0.874882	0.472205	204	60.8867	143.113	70	25.8779	44.1221
Ymf79|P.multimicronucleatum-Sample_M04	Ymf79|P.biaurelia-Sample_379	0.468123	0.772825	0.60573	204	50.3657	153.634	73	21.2378	51.7622
Ymf79|P.multimicronucleatum-Sample_M04	Ymf79|Sample_C026	0.329645	0.389234	0.846909	198	38.9841	159.016	52	10.6356	41.3644
Ymf79|P.multimicronucleatum-Sample_M04	Ymf79|Sample_M13	0.208477	0.398389	0.523301	234	49.0595	184.941	48	14.7132	33.2868
Ymf79|P.multimicronucleatum-Sample_M04	Ymf79|P.octaurelia-Sample_1038	0.504742	0.871318	0.579285	204	61.0269	142.973	78	27.053	50.947
Ymf79|P.caudatum-Sample_C104	Ymf79|P.sexaurelia-Sample_130	0.486302	0.795164	0.611575	207	63.122	143.878	76	26.1989	49.8011
Ymf79|P.caudatum-Sample_C104	Ymf79|P.biaurelia-Sample_379	0.566352	1.44235	0.392658	207	48.0754	158.925	86	25.1248	60.8752
Ymf79|P.caudatum-Sample_C104	Ymf79|Sample_C026	0.150573	0.391355	0.384749	225	54.4171	170.583	39	15.9849	23.0151
Ymf79|P.caudatum-Sample_C104	Ymf79|Sample_M13	0.371718	0.572081	0.649765	207	35.1924	171.808	62	13.3677	48.6323
Ymf79|P.caudatum-Sample_C104	Ymf79|P.octaurelia-Sample_1038	0.452026	1.03239	0.437846	195	55.1039	139.896	72	25.7266	46.2734
Ymf79|P.sexaurelia-Sample_130	Ymf79|P.biaurelia-Sample_379	0.121264	1.86223	0.0651176	210	54.91	155.09	55	37.744	17.256
Ymf79|P.sexaurelia-Sample_130	Ymf79|Sample_C026	0.442399	0.606844	0.729016	189	70.0227	118.977	65	26.1858	38.8142
Ymf79|P.sexaurelia-Sample_130	Ymf79|Sample_M13	0.642529	0.59369	1.08226	201	75.743	125.257	80	28.1559	51.8441
Ymf79|P.sexaurelia-Sample_130	Ymf79|P.octaurelia-Sample_1038	0.115253	0.640491	0.179944	210	75.5926	134.407	45	30.785	14.215
Ymf79|P.biaurelia-Sample_379	Ymf79|Sample_C026	0.514898	0.69052	0.745668	204	56.7831	147.217	78	24.3768	53.6232
Ymf79|P.biaurelia-Sample_379	Ymf79|Sample_M13	0.553177	0.90677	0.610052	201	54.9014	146.099	80	24.4088	55.5912
Ymf79|P.biaurelia-Sample_379	Ymf79|P.octaurelia-Sample_1038	0.126577	0.671242	0.188571	210	68.6495	141.351	44	27.6906	16.3094
Ymf79|Sample_C026	Ymf79|Sample_M13	0.400877	0.583213	0.68736	207	49.8629	157.137	67	19.4791	47.5209
Ymf79|Sample_C026	Ymf79|P.octaurelia-Sample_1038	0.492755	0.480755	1.02496	162	32.5	129.5	56	10.1209	45.8791
Ymf79|Sample_M13	Ymf79|P.octaurelia-Sample_1038	0.674598	0.599103	1.12601	201	70.1284	130.872	82	25.654	56.346
#Average Ka: 0.382116544444
#Average Ks: 0.796576944444
#Average KaKs: 0.6165145