#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf65|Sample_C026	Ymf65|P.caudatum-Sample_C104	0.0349809	0.61382	0.0569889	417	69.8323	347.168	38	26.1841	11.8159
Ymf65|Sample_C026	Ymf65|Sample_M13	0.382068	0.113159	3.37636	1005	293.638	711.362	236	30.0969	205.903
Ymf65|Sample_C026	Ymf65|Sample_Peniche3I	0.195663	3.59682	0.0543989	1095	120.997	974.003	258	93.4648	164.535
Ymf65|Sample_C026	Ymf65|P.octaurelia-Sample_1038	0.309811	1.12023	0.276561	1101	391.281	709.719	404	227.563	176.437
Ymf65|Sample_C026	Ymf65|P.biaurelia-Sample_379	0.308117	1.50748	0.204392	1095	386.254	708.746	427	250.874	176.126
Ymf65|Sample_C026	Ymf65|P.multimicronucleatum-Sample_M04	0.392077	0.138085	2.83939	993	287.684	705.316	241	35.041	205.959
Ymf65|Sample_C026	Ymf65|P.sexaurelia-Sample_130	0.284036	1.1992	0.236855	1095	384.983	710.017	395	230.38	164.62
Ymf65|P.caudatum-Sample_C104	Ymf65|Sample_M13	0.210872	0.437595	0.481888	375	68.7464	306.254	76	20.676	55.324
Ymf65|P.caudatum-Sample_C104	Ymf65|Sample_Peniche3I	0.239488	0.264307	0.906096	381	58.3379	322.662	77	12.2538	64.7462
Ymf65|P.caudatum-Sample_C104	Ymf65|P.octaurelia-Sample_1038	0.446891	0.696511	0.641614	396	165.524	230.476	139	64.2587	74.7413
Ymf65|P.caudatum-Sample_C104	Ymf65|P.biaurelia-Sample_379	0.373845	0.472333	0.791487	348	125.142	222.858	103	39.4298	63.5702
Ymf65|P.caudatum-Sample_C104	Ymf65|P.multimicronucleatum-Sample_M04	0.291009	1.51349	0.192277	381	54.6347	326.365	105	29.4196	75.5804
Ymf65|P.caudatum-Sample_C104	Ymf65|P.sexaurelia-Sample_130	0.492784	0.486924	1.01203	375	175.028	199.972	124	54.6437	69.3563
Ymf65|Sample_M13	Ymf65|Sample_Peniche3I	0.0388304	0.53304	0.072847	1095	168.402	926.598	93	58.0924	34.9076
Ymf65|Sample_M13	Ymf65|P.octaurelia-Sample_1038	0.484597	1.43029	0.338811	1047	332.68	714.32	418	172.354	245.646
Ymf65|Sample_M13	Ymf65|P.biaurelia-Sample_379	0.658875	0.609655	1.08073	969	217.716	751.284	387	79.7994	307.201
Ymf65|Sample_M13	Ymf65|P.multimicronucleatum-Sample_M04	0.117009	2.58206	0.0453162	1101	121.902	979.098	177	71.9275	105.073
Ymf65|Sample_M13	Ymf65|P.sexaurelia-Sample_130	0.821186	0.280387	2.92875	996	268.748	727.252	395	58.7653	336.235
Ymf65|Sample_Peniche3I	Ymf65|P.octaurelia-Sample_1038	0.494081	1.07943	0.457721	1032	336.647	695.353	404	162.164	241.836
Ymf65|Sample_Peniche3I	Ymf65|P.biaurelia-Sample_379	0.673945	0.651386	1.03463	990	244.653	745.347	400	92.7567	307.243
Ymf65|Sample_Peniche3I	Ymf65|P.multimicronucleatum-Sample_M04	0.122739	3.01969	0.0406464	1095	119.696	975.304	181	71.6012	109.399
Ymf65|Sample_Peniche3I	Ymf65|P.sexaurelia-Sample_130	0.341908	1.25751	0.271893	1077	364.808	712.192	414	222.444	191.556
Ymf65|P.octaurelia-Sample_1038	Ymf65|P.biaurelia-Sample_379	0.0774717	0.863704	0.089697	1095	320.253	774.747	202	145.233	56.7669
Ymf65|P.octaurelia-Sample_1038	Ymf65|P.multimicronucleatum-Sample_M04	0.370497	1.62711	0.227702	1086	348.971	737.029	443	231.83	211.17
Ymf65|P.octaurelia-Sample_1038	Ymf65|P.sexaurelia-Sample_130	0.0970482	1.17072	0.0828962	1095	339.025	755.975	237	168.539	68.4613
Ymf65|P.biaurelia-Sample_379	Ymf65|P.multimicronucleatum-Sample_M04	0.40926	1.24503	0.328715	1056	347.807	708.193	430	211.259	218.741
Ymf65|P.biaurelia-Sample_379	Ymf65|P.sexaurelia-Sample_130	0.0848181	1.81413	0.0467542	1095	338.501	756.499	245	184.62	60.3801
Ymf65|P.multimicronucleatum-Sample_M04	Ymf65|P.sexaurelia-Sample_130	0.68706	0.653071	1.05204	1041	297.45	743.55	429	114.98	314.02
#Average Ka: 0.337177403571
#Average Ks: 1.10632739286
#Average KaKs: 0.684624528571