#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf63|P.octaurelia-Sample_1038	Ymf63|Sample_C026	0.60271	1.21944	0.494252	1410	364.516	1045.48	618	189.22	428.78
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.multimicronucleatum-Sample_M04	0.733528	0.935247	0.784314	1089	274.055	814.945	499	128.695	370.305
Ymf63|P.octaurelia-Sample_1038	Ymf63|Sample_M13	0.73908	0.912941	0.809559	1230	340.568	889.432	569	158.402	410.598
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.tetraurelia-Sample_291	0.0838263	1.43159	0.0585547	1677	377.45	1299.55	344	241.117	102.883
Ymf63|P.octaurelia-Sample_1038	Ymf63|Sample_Peniche3I	0.757	0.681299	1.11111	1197	322.098	874.902	539	132.641	406.359
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.sexaurelia-Sample_130	0.159023	4.46563	0.0356105	1677	385.356	1291.64	498	313.224	184.776
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.biaurelia-Sample_379	0.332126	0.210212	1.57995	1611	515	1096	383	92.8551	290.145
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.caudatum-Sample_C104	0.642195	1.07732	0.596103	1329	369.844	959.156	592	187.243	404.757
Ymf63|Sample_C026	Ymf63|P.multimicronucleatum-Sample_M04	0.341438	0.434298	0.786184	1077	169.087	907.913	298	52.3184	245.682
Ymf63|Sample_C026	Ymf63|Sample_M13	0.471688	0.307959	1.53166	1197	278.558	918.442	383	66.5103	316.49
Ymf63|Sample_C026	Ymf63|P.tetraurelia-Sample_291	0.885404	0.676145	1.30949	1362	390.48	971.52	648	159.629	488.371
Ymf63|Sample_C026	Ymf63|Sample_Peniche3I	0.387156	0.450962	0.858511	1245	246.184	998.816	377	78.2082	298.792
Ymf63|Sample_C026	Ymf63|P.sexaurelia-Sample_130	0.644198	0.767523	0.839321	1359	343.14	1015.86	582	148.608	433.392
Ymf63|Sample_C026	Ymf63|P.biaurelia-Sample_379	0.737266	0.787239	0.936521	1338	359.951	978.049	606	154.89	451.11
Ymf63|Sample_C026	Ymf63|P.caudatum-Sample_C104	0.337909	0.320097	1.05565	1704	330.196	1373.8	454	83.8835	370.116
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|Sample_M13	0.298546	0.206913	1.44286	1056	238.744	817.256	241	41.3826	199.617
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.tetraurelia-Sample_291	0.900204	0.851383	1.05734	1047	275.784	771.216	509	124.124	384.876
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|Sample_Peniche3I	0.212491	0.642883	0.330528	1191	183.67	1007.33	260	75.3294	184.671
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.sexaurelia-Sample_130	0.797765	0.564506	1.41321	1050	302.484	747.516	465	108.59	356.41
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.biaurelia-Sample_379	0.75274	0.912894	0.824564	1044	284.044	759.956	479	128.366	350.634
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.caudatum-Sample_C104	0.405783	0.287136	1.41321	1002	233.327	768.673	289	52.8075	236.192
Ymf63|Sample_M13	Ymf63|P.tetraurelia-Sample_291	0.97456	0.640675	1.52114	1188	328.052	859.948	571	127.158	443.842
Ymf63|Sample_M13	Ymf63|Sample_Peniche3I	0.142062	0.656823	0.216286	1611	240.859	1370.14	273	96.7773	176.223
Ymf63|Sample_M13	Ymf63|P.sexaurelia-Sample_130	0.646247	1.47505	0.43812	1197	286.069	910.931	537	149.347	387.653
Ymf63|Sample_M13	Ymf63|P.biaurelia-Sample_379	0.937279	0.515737	1.81736	1143	317.026	825.974	530	109.136	420.864
Ymf63|Sample_M13	Ymf63|P.caudatum-Sample_C104	0.438439	0.428688	1.02275	1212	262.211	949.789	393	82.2464	310.754
Ymf63|P.tetraurelia-Sample_291	Ymf63|Sample_Peniche3I	1.05264	0.696709	1.51088	1263	358.127	904.873	640	148.479	491.521
Ymf63|P.tetraurelia-Sample_291	Ymf63|P.sexaurelia-Sample_130	0.387246	0.34095	1.13579	1626	493.284	1132.72	470	132.346	337.654
Ymf63|P.tetraurelia-Sample_291	Ymf63|P.biaurelia-Sample_379	0.162511	1.91275	0.0849621	1671	378.351	1292.65	450	261.614	188.386
Ymf63|P.tetraurelia-Sample_291	Ymf63|P.caudatum-Sample_C104	0.636258	1.12154	0.567309	1398	386.383	1011.62	651	224.828	426.172
Ymf63|Sample_Peniche3I	Ymf63|P.sexaurelia-Sample_130	0.809481	0.586044	1.38126	1215	307.358	907.642	554	114.661	439.339
Ymf63|Sample_Peniche3I	Ymf63|P.biaurelia-Sample_379	0.879019	0.703709	1.24912	1200	327.854	872.146	569	134.78	434.22
Ymf63|Sample_Peniche3I	Ymf63|P.caudatum-Sample_C104	0.424302	0.461071	0.920254	1227	245.936	981.064	390	77.6072	312.393
Ymf63|P.sexaurelia-Sample_130	Ymf63|P.biaurelia-Sample_379	0.213488	1.59409	0.133925	1626	432.34	1193.66	473	252.166	220.834
Ymf63|P.sexaurelia-Sample_130	Ymf63|P.caudatum-Sample_C104	0.731327	0.606311	1.20619	1278	317.363	960.637	559	120.763	438.237
Ymf63|P.biaurelia-Sample_379	Ymf63|P.caudatum-Sample_C104	0.829608	0.548699	1.51196	1362	362.87	999.13	620	130.933	489.067
#Average Ka: 0.569070647222
#Average Ks: 0.845346194444
#Average KaKs: 0.944050230556