#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf59|P.biaurelia-Sample_379	Ymf59|P.multimicronucleatum-Sample_M04	0.590626	1.14315	0.516664	282	77.9235	204.076	120	38.1713	81.8287
Ymf59|P.biaurelia-Sample_379	Ymf59|P.caudatum-Sample_C104	0.651493	0.703365	0.926252	297	84.3961	212.604	125	35.9055	89.0945
Ymf59|P.biaurelia-Sample_379	Ymf59|Sample_C026	0.532023	1.65118	0.322208	330	84.9087	245.091	140	48.6838	91.3162
Ymf59|P.biaurelia-Sample_379	Ymf59|Sample_M13	0.713141	0.841418	0.847546	288	89.0755	198.924	128	40.4287	87.5713
Ymf59|P.biaurelia-Sample_379	Ymf59|P.octaurelia-Sample_1038	0.164468	2.15762	0.0762267	348	86.2095	261.79	89	50.4338	38.5662
Ymf59|P.biaurelia-Sample_379	Ymf59|P.sexaurelia-Sample_130	0.194866	2.71721	0.0717153	348	84.6103	263.39	97	52.0003	44.9997
Ymf59|P.biaurelia-Sample_379	Ymf59|P.tetraurelia-Sample_291	0.124424	0.871072	0.142841	339	86.4111	252.589	70	41.1886	28.8114
Ymf59|P.biaurelia-Sample_379	Ymf59|Sample_Peniche3I	0.81419	0.388981	2.09313	255	54.5296	200.47	110	15.1473	94.8527
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.caudatum-Sample_C104	0.468627	0.364918	1.2842	300	77.6396	222.36	98	21.7745	76.2255
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|Sample_C026	0.441099	0.234438	1.88152	285	72.2243	212.776	84	13.8337	70.1663
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|Sample_M13	0.104533	2.1377	0.0488997	366	43.4089	322.591	59	27.7035	31.2965
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.octaurelia-Sample_1038	0.619639	2.73492	0.226565	273	69.5776	203.422	122	38.3923	83.6077
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.sexaurelia-Sample_130	0.746433	1.89708	0.393463	303	84.4738	218.526	147	46.48	100.52
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.tetraurelia-Sample_291	0.621638	2.09226	0.297113	282	69.4293	212.571	129	41.4315	87.5685
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|Sample_Peniche3I	0.0955328	1.46938	0.0650156	366	59.1274	306.873	63	35.5662	27.4338
Ymf59|P.caudatum-Sample_C104	Ymf59|Sample_C026	0.171734	2.15579	0.0796617	384	60.1056	323.894	85	35.7061	49.2939
Ymf59|P.caudatum-Sample_C104	Ymf59|Sample_M13	0.400623	0.679024	0.589999	312	48.0565	263.944	101	20.1809	80.8191
Ymf59|P.caudatum-Sample_C104	Ymf59|P.octaurelia-Sample_1038	0.753245	1.00028	0.753036	291	64.4389	226.561	134	29.486	104.514
Ymf59|P.caudatum-Sample_C104	Ymf59|P.sexaurelia-Sample_130	0.395151	3.33785	0.118385	327	85.6667	241.333	139	65.804	73.196
Ymf59|P.caudatum-Sample_C104	Ymf59|P.tetraurelia-Sample_291	0.853077	0.818366	1.04242	294	78.1119	215.888	142	36.046	105.954
Ymf59|P.caudatum-Sample_C104	Ymf59|Sample_Peniche3I	0.369442	0.937966	0.393875	321	48.0084	272.992	103	24.3075	78.6925
Ymf59|Sample_C026	Ymf59|Sample_M13	0.466994	0.329159	1.41875	264	70.4359	193.564	84	17.7429	66.2571
Ymf59|Sample_C026	Ymf59|P.octaurelia-Sample_1038	0.485103	5.73825	0.0845385	297	82.1199	214.88	137	61.5607	75.4393
Ymf59|Sample_C026	Ymf59|P.sexaurelia-Sample_130	0.687716	0.540714	1.27187	276	69.3855	206.614	114	24.1867	89.8133
Ymf59|Sample_C026	Ymf59|P.tetraurelia-Sample_291	0.714065	0.999539	0.714394	279	81.4254	197.575	126	39.0501	86.9499
Ymf59|Sample_C026	Ymf59|Sample_Peniche3I	0.507341	0.294551	1.72242	258	67.2317	190.768	85	15.752	69.248
Ymf59|Sample_M13	Ymf59|P.octaurelia-Sample_1038	0.729133	0.595772	1.22385	267	69.9814	197.019	114	25.5896	88.4104
Ymf59|Sample_M13	Ymf59|P.sexaurelia-Sample_130	0.741242	0.83617	0.886473	282	77.9901	204.01	127	35.1674	91.8326
Ymf59|Sample_M13	Ymf59|P.tetraurelia-Sample_291	0.760398	1.31685	0.577438	297	82.8659	214.134	143	42.7831	100.217
Ymf59|Sample_M13	Ymf59|Sample_Peniche3I	0.0295995	0.851357	0.0347675	366	48.7021	317.298	32	22.8041	9.19591
Ymf59|P.octaurelia-Sample_1038	Ymf59|P.sexaurelia-Sample_130	0.218659	3.30644	0.0661314	348	82.1529	265.847	113	62.7071	50.2929
Ymf59|P.octaurelia-Sample_1038	Ymf59|P.tetraurelia-Sample_291	0.0794563	1.22742	0.0647342	339	94.9563	244.044	66	47.7241	18.2759
Ymf59|P.octaurelia-Sample_1038	Ymf59|Sample_Peniche3I	0.811019	0.599123	1.35368	300	78.2444	221.756	135	30.109	104.891
Ymf59|P.sexaurelia-Sample_130	Ymf59|P.tetraurelia-Sample_291	0.202874	1.80018	0.112697	339	90.4776	248.522	98	54.1473	43.8527
Ymf59|P.sexaurelia-Sample_130	Ymf59|Sample_Peniche3I	0.77715	0.762568	1.01912	297	71.6422	225.358	136	31.0396	104.96
Ymf59|P.tetraurelia-Sample_291	Ymf59|Sample_Peniche3I	0.757391	0.903749	0.838055	273	66.9549	206.045	124	30.0942	93.9058
#Average Ka: 0.494281822222
#Average Ks: 1.40099472222
#Average KaKs: 0.65443485