#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh2|P.sexaurelia-Sample_130	nadh2|P.biaurelia-Sample_379	0.126875	0.75186	0.168748	477	170.682	306.318	106	70.7469	35.2531
nadh2|P.sexaurelia-Sample_130	nadh2|P.tetraurelia-Sample_291	0.180319	0.660895	0.272841	480	178.625	301.375	117	69.7543	47.2457
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_M13	0.42619	2.87196	0.148397	489	141.102	347.898	192	82.7933	109.207
nadh2|P.sexaurelia-Sample_130	nadh2|P.multimicronucleatum-Sample_M04	0.46283	2.66091	0.173937	447	132.868	314.132	181	76.2617	104.738
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_C026	0.254371	1.88205	0.135156	501	135.723	365.277	156	78.7001	77.2999
nadh2|P.sexaurelia-Sample_130	nadh2|P.caudatum-Sample_C104	0.27502	1.10191	0.249585	504	140.447	363.553	163	81.0968	81.9032
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_Peniche3I	0.422328	1.30678	0.323182	486	137.633	348.367	194	85.1495	108.851
nadh2|P.sexaurelia-Sample_130	nadh2|P.octaurelia-Sample_1038	0.131217	0.573407	0.228837	504	174.424	329.576	102	62.8517	39.1483
nadh2|P.biaurelia-Sample_379	nadh2|P.tetraurelia-Sample_291	0.114852	0.601585	0.190915	471	187.328	283.672	99	69.3164	29.6836
nadh2|P.biaurelia-Sample_379	nadh2|Sample_M13	0.357168	2.03991	0.17509	471	139.971	331.029	164	73.1953	90.8047
nadh2|P.biaurelia-Sample_379	nadh2|P.multimicronucleatum-Sample_M04	0.387539	2.32512	0.166674	444	127.398	316.602	166	73.7026	92.2974
nadh2|P.biaurelia-Sample_379	nadh2|Sample_C026	0.227008	3.4058	0.0666535	468	144.6	323.4	140	78.2347	61.7653
nadh2|P.biaurelia-Sample_379	nadh2|P.caudatum-Sample_C104	0.241929	1.59556	0.151627	471	149.514	321.486	145	80.1437	64.8563
nadh2|P.biaurelia-Sample_379	nadh2|Sample_Peniche3I	0.35484	2.6373	0.134546	468	135.764	332.236	167	76.1719	90.8281
nadh2|P.biaurelia-Sample_379	nadh2|P.octaurelia-Sample_1038	0.0954936	0.405697	0.235381	471	197.988	273.012	81	56.8813	24.1187
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_M13	0.340721	1.52911	0.222823	474	130.094	343.906	176	84.8685	91.1315
nadh2|P.tetraurelia-Sample_291	nadh2|P.multimicronucleatum-Sample_M04	0.415704	1.21792	0.341324	441	131.135	309.865	174	78.9631	95.0369
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_C026	0.250665	1.89942	0.13197	477	150.321	326.679	146	78.2902	67.7098
nadh2|P.tetraurelia-Sample_291	nadh2|P.caudatum-Sample_C104	0.26646	1.32459	0.201164	480	153.002	326.998	153	81.6784	71.3216
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_Peniche3I	0.363063	1.40826	0.257809	474	131.813	342.187	179	83.7398	95.2602
nadh2|P.tetraurelia-Sample_291	nadh2|P.octaurelia-Sample_1038	0.118271	0.350226	0.3377	480	197.72	282.28	82	51.7636	30.2364
nadh2|Sample_M13	nadh2|P.multimicronucleatum-Sample_M04	0.128783	0.712804	0.180671	441	46.0317	394.968	65	18.9007	46.0993
nadh2|Sample_M13	nadh2|Sample_C026	0.22227	2.92427	0.0760088	480	49.3542	430.646	120	39.3755	80.6245
nadh2|Sample_M13	nadh2|P.caudatum-Sample_C104	0.231175	2.16243	0.106905	483	48.9317	434.068	118	33.777	84.223
nadh2|Sample_M13	nadh2|Sample_Peniche3I	0.0634414	0.208084	0.304883	489	91.9141	397.086	40	16.1388	23.8612
nadh2|Sample_M13	nadh2|P.octaurelia-Sample_1038	0.336976	1.58733	0.212291	483	125.846	357.154	177	83.0147	93.9853
nadh2|P.multimicronucleatum-Sample_M04	nadh2|Sample_C026	0.216679	2.75634	0.0786112	441	39.4534	401.547	108	34.3372	73.6628
nadh2|P.multimicronucleatum-Sample_M04	nadh2|P.caudatum-Sample_C104	0.206264	2.66777	0.0773171	441	35.0586	405.941	101	29.3743	71.6257
nadh2|P.multimicronucleatum-Sample_M04	nadh2|Sample_Peniche3I	0.156675	1.08787	0.144019	438	45.8205	392.18	75	20.4599	54.5401
nadh2|P.multimicronucleatum-Sample_M04	nadh2|P.octaurelia-Sample_1038	0.360386	1.84365	0.195474	441	123.543	317.457	159	70.9097	88.0903
nadh2|Sample_C026	nadh2|P.caudatum-Sample_C104	0.031602	0.270983	0.11662	555	109.003	445.997	38	24.2749	13.7251
nadh2|Sample_C026	nadh2|Sample_Peniche3I	0.212576	2.81186	0.0755997	480	42.4847	437.515	116	37.192	78.808
nadh2|Sample_C026	nadh2|P.octaurelia-Sample_1038	0.225219	0.860958	0.261592	555	158.474	396.526	147	71.2394	75.7606
nadh2|P.caudatum-Sample_C104	nadh2|Sample_Peniche3I	0.224987	2.79633	0.0804579	483	41.6143	441.386	115	31.3563	83.6437
nadh2|P.caudatum-Sample_C104	nadh2|P.octaurelia-Sample_1038	0.244075	1.07269	0.227535	558	162.409	395.591	158	77.2175	80.7825
nadh2|Sample_Peniche3I	nadh2|P.octaurelia-Sample_1038	0.35846	1.26221	0.283993	483	127.461	355.539	176	77.8315	98.1685
#Average Ks: 1.59932913889
#Average Ka: 0.250900888889
#Average KaKs: 0.187120477778