#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf67|P.caudatum-Sample_C104	Ymf67|Sample_M13	0.403147	0.402288	1.00214	975	199.935	775.065	298	60.2541	237.746
Ymf67|P.caudatum-Sample_C104	Ymf67|P.biaurelia-Sample_379	0.541904	0.781454	0.693457	987	250.918	736.082	391	112.467	278.533
Ymf67|P.caudatum-Sample_C104	Ymf67|Sample_C026	0.120156	0.286529	0.419349	996	238.305	757.695	139	55.313	83.687
Ymf67|P.caudatum-Sample_C104	Ymf67|Sample_Peniche3I	0.405402	0.347343	1.16715	972	196.413	775.587	292	53.1675	238.832
Ymf67|P.caudatum-Sample_C104	Ymf67|P.sexaurelia-Sample_130	0.516246	0.65799	0.78458	978	264.271	713.729	365	106.162	258.838
Ymf67|P.caudatum-Sample_C104	Ymf67|P.multimicronucleatum-Sample_M04	0.44001	0.408186	1.07796	942	192.348	749.652	302	57.9419	244.058
Ymf67|P.caudatum-Sample_C104	Ymf67|P.octaurelia-Sample_1038	0.564055	0.602692	0.935892	942	247.285	694.715	367	96.881	270.119
Ymf67|P.caudatum-Sample_C104	Ymf67|P.tetraurelia-Sample_291	0.641334	0.917108	0.6993	957	255.677	701.323	418	122.404	295.596
Ymf67|Sample_M13	Ymf67|P.biaurelia-Sample_379	0.589805	0.708153	0.832878	984	247.344	736.656	398	102.616	295.384
Ymf67|Sample_M13	Ymf67|Sample_C026	0.381496	0.39714	0.960609	972	182.989	789.011	287	54.8345	232.166
Ymf67|Sample_M13	Ymf67|Sample_Peniche3I	0.0569289	0.0846188	0.672769	1008	256.198	751.802	61	20	41
Ymf67|Sample_M13	Ymf67|P.sexaurelia-Sample_130	0.50215	0.669076	0.750512	972	231.576	740.424	359	92.8412	266.159
Ymf67|Sample_M13	Ymf67|P.multimicronucleatum-Sample_M04	0.109106	0.222526	0.490308	960	198.897	761.103	114	37.1974	76.8026
Ymf67|Sample_M13	Ymf67|P.octaurelia-Sample_1038	0.554317	0.754821	0.734368	945	227.16	717.84	376	98.5718	277.428
Ymf67|Sample_M13	Ymf67|P.tetraurelia-Sample_291	0.579139	1.24483	0.465235	960	232.511	727.489	409	120.038	288.962
Ymf67|P.biaurelia-Sample_379	Ymf67|Sample_C026	0.561679	0.640585	0.876822	981	258.163	722.837	382	101.157	280.843
Ymf67|P.biaurelia-Sample_379	Ymf67|Sample_Peniche3I	0.586924	0.685781	0.855848	981	245.659	735.341	394	100.482	293.518
Ymf67|P.biaurelia-Sample_379	Ymf67|P.sexaurelia-Sample_130	0.26992	0.661005	0.408348	996	263.313	732.687	269	104.948	164.052
Ymf67|P.biaurelia-Sample_379	Ymf67|P.multimicronucleatum-Sample_M04	0.628404	0.662318	0.948796	951	251.295	699.705	391	100.04	290.96
Ymf67|P.biaurelia-Sample_379	Ymf67|P.octaurelia-Sample_1038	0.270513	0.559291	0.483672	972	280.4	691.6	256	101.287	154.713
Ymf67|P.biaurelia-Sample_379	Ymf67|P.tetraurelia-Sample_291	0.284435	0.59864	0.475135	984	261.2	722.8	268	97.985	170.015
Ymf67|Sample_C026	Ymf67|Sample_Peniche3I	0.37215	0.379598	0.980381	969	176.549	792.451	280	51.32	228.68
Ymf67|Sample_C026	Ymf67|P.sexaurelia-Sample_130	0.506536	0.630027	0.80399	975	247.144	727.856	358	95.4733	262.527
Ymf67|Sample_C026	Ymf67|P.multimicronucleatum-Sample_M04	0.402045	0.399752	1.00574	939	178.002	760.998	285	53.2327	231.767
Ymf67|Sample_C026	Ymf67|P.octaurelia-Sample_1038	0.544335	0.547324	0.994539	939	250.435	688.565	353	91.1374	261.863
Ymf67|Sample_C026	Ymf67|P.tetraurelia-Sample_291	0.601861	0.748426	0.804169	954	250.264	703.736	393	106.932	286.068
Ymf67|Sample_Peniche3I	Ymf67|P.sexaurelia-Sample_130	0.487872	0.724356	0.673525	972	228.771	743.229	357	95.7915	261.209
Ymf67|Sample_Peniche3I	Ymf67|P.multimicronucleatum-Sample_M04	0.0999801	0.224354	0.445636	957	186.517	770.483	107	35.2913	71.7087
Ymf67|Sample_Peniche3I	Ymf67|P.octaurelia-Sample_1038	0.533096	0.800556	0.665907	945	222.102	722.898	371	99.4466	271.553
Ymf67|Sample_Peniche3I	Ymf67|P.tetraurelia-Sample_291	0.590792	1.11108	0.531725	960	234.382	725.618	408	116.549	291.451
Ymf67|P.sexaurelia-Sample_130	Ymf67|P.multimicronucleatum-Sample_M04	0.529963	0.536101	0.98855	942	234.87	707.13	345	82.6917	262.308
Ymf67|P.sexaurelia-Sample_130	Ymf67|P.octaurelia-Sample_1038	0.27598	0.863596	0.31957	963	250.174	712.826	279	116.269	162.731
Ymf67|P.sexaurelia-Sample_130	Ymf67|P.tetraurelia-Sample_291	0.289445	0.722062	0.400859	969	236.32	732.68	275	100.419	174.581
Ymf67|P.multimicronucleatum-Sample_M04	Ymf67|P.octaurelia-Sample_1038	0.549621	0.853797	0.643737	948	226.76	721.24	380	103.768	276.232
Ymf67|P.multimicronucleatum-Sample_M04	Ymf67|P.tetraurelia-Sample_291	0.583581	1.06241	0.549298	960	240.694	719.306	404	117.583	286.417
Ymf67|P.octaurelia-Sample_1038	Ymf67|P.tetraurelia-Sample_291	0.256254	0.48778	0.525346	978	286.497	691.503	243	95.1397	147.86
#Average Ks: 0.621766494444
#Average Ka: 0.434182833333
#Average KaKs: 0.724113888889