#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf56|P.octaurelia-Sample_1038	Ymf56|Sample_C026	0.361842	0.112021	3.23013	276	56.5183	219.482	67	5.67151	61.3285
Ymf56|P.octaurelia-Sample_1038	Ymf56|P.multimicronucleatum-Sample_M04	0.416701	0.514224	0.81035	240	33.5317	206.468	76	11.6659	64.3341
Ymf56|P.octaurelia-Sample_1038	Ymf56|Sample_M13	0.440209	0.452787	0.972222	234	35.7831	198.217	76	11.4653	64.5347
Ymf56|P.octaurelia-Sample_1038	Ymf56|P.tetraurelia-Sample_291	0.168287	0.134352	1.25258	411	97.7702	313.23	58	11.7617	46.2383
Ymf56|P.octaurelia-Sample_1038	Ymf56|Sample_Peniche3I	0.618296	0.712122	0.868245	282	45.2845	236.715	117	19.4971	97.5029
Ymf56|P.octaurelia-Sample_1038	Ymf56|P.sexaurelia-Sample_130	0.261213	NA	NA	204	33.6882	170.312	36	NA	36
Ymf56|P.octaurelia-Sample_1038	Ymf56|P.biaurelia-Sample_379	0.13122	0.0836213	1.56921	216	37.9132	178.087	24	3	21
Ymf56|P.octaurelia-Sample_1038	Ymf56|P.caudatum-Sample_C104	0.45594	0.119555	3.81364	273	56.9605	216.039	78	6.16769	71.8323
Ymf56|Sample_C026	Ymf56|P.multimicronucleatum-Sample_M04	0.332648	0.232586	1.43021	237	46.4531	190.547	59	9.17782	49.8222
Ymf56|Sample_C026	Ymf56|Sample_M13	0.420211	0.187267	2.24391	237	67.7535	169.247	64	10.8016	53.1984
Ymf56|Sample_C026	Ymf56|P.tetraurelia-Sample_291	0.439312	0.23753	1.8495	276	66.5943	209.406	80	12.9997	67.0003
Ymf56|Sample_C026	Ymf56|Sample_Peniche3I	0.637257	0.262628	2.42646	276	79.8787	196.121	99	17.0295	81.9705
Ymf56|Sample_C026	Ymf56|P.sexaurelia-Sample_130	0.349048	0.122554	2.84811	201	50.4231	150.577	46	5.52546	40.4745
Ymf56|Sample_C026	Ymf56|P.biaurelia-Sample_379	0.263426	0.132829	1.98321	207	56.8324	150.168	39	6.69707	32.3029
Ymf56|Sample_C026	Ymf56|P.caudatum-Sample_C104	0.172315	0.0601089	2.86671	282	71.0978	210.902	36	4.07554	31.9245
Ymf56|P.multimicronucleatum-Sample_M04	Ymf56|Sample_M13	0.0988552	2.01281	0.049113	270	29.876	240.124	43	20.8765	22.1235
Ymf56|P.multimicronucleatum-Sample_M04	Ymf56|P.tetraurelia-Sample_291	0.45845	0.992421	0.461951	267	72.0439	194.956	99	33.9708	65.0292
Ymf56|P.multimicronucleatum-Sample_M04	Ymf56|Sample_Peniche3I	0.130965	1.39336	0.0939922	276	32.024	243.976	49	19.8387	29.1613
Ymf56|P.multimicronucleatum-Sample_M04	Ymf56|P.sexaurelia-Sample_130	0.328721	1.05346	0.31204	228	68.8819	159.118	75	33.3662	41.6338
Ymf56|P.multimicronucleatum-Sample_M04	Ymf56|P.biaurelia-Sample_379	0.248727	1.0933	0.2275	237	54.915	182.085	65	26.8776	38.1224
Ymf56|P.multimicronucleatum-Sample_M04	Ymf56|P.caudatum-Sample_C104	0.353231	0.941847	0.375041	273	50.6161	222.384	86	24.341	61.659
Ymf56|Sample_M13	Ymf56|P.tetraurelia-Sample_291	0.443372	1.4118	0.314048	264	67.4693	196.531	98	33.7629	64.2371
Ymf56|Sample_M13	Ymf56|Sample_Peniche3I	0.0657017	0.850673	0.077235	273	23.0478	249.952	26	10.3382	15.6618
Ymf56|Sample_M13	Ymf56|P.sexaurelia-Sample_130	0.30034	1.19765	0.250775	231	61.0584	169.942	78	36.5191	41.4809
Ymf56|Sample_M13	Ymf56|P.biaurelia-Sample_379	0.270117	0.608788	0.443697	240	53.2005	186.8	62	20.017	41.983
Ymf56|Sample_M13	Ymf56|P.caudatum-Sample_C104	0.368924	1.35933	0.271401	270	50.3112	219.689	90	26.7525	63.2475
Ymf56|P.tetraurelia-Sample_291	Ymf56|Sample_Peniche3I	0.548014	1.62531	0.337176	303	60.7851	242.215	132	40.3684	91.6316
Ymf56|P.tetraurelia-Sample_291	Ymf56|P.sexaurelia-Sample_130	0.185183	0.456868	0.405331	231	109.312	121.688	54	34.201	19.799
Ymf56|P.tetraurelia-Sample_291	Ymf56|P.biaurelia-Sample_379	0.145692	0.265468	0.548812	240	106.306	133.694	40	22.4109	17.5891
Ymf56|P.tetraurelia-Sample_291	Ymf56|P.caudatum-Sample_C104	0.273013	1.07617	0.253689	300	75.8169	224.183	94	43.3214	50.6786
Ymf56|Sample_Peniche3I	Ymf56|P.sexaurelia-Sample_130	0.564269	0.166101	3.39714	204	38.5294	165.471	69	5.4638	63.5362
Ymf56|Sample_Peniche3I	Ymf56|P.biaurelia-Sample_379	0.440517	0.223119	1.97436	213	38.8266	174.173	64	7.13752	56.8625
Ymf56|Sample_Peniche3I	Ymf56|P.caudatum-Sample_C104	0.640772	0.285166	2.24701	282	53.82	228.18	109	12.3971	96.6029
Ymf56|P.sexaurelia-Sample_130	Ymf56|P.biaurelia-Sample_379	0.0208022	99	0.000210123	231	29.6689	201.331	40	35.9313	4.06866
Ymf56|P.sexaurelia-Sample_130	Ymf56|P.caudatum-Sample_C104	0.163561	0.760178	0.215161	231	66.6416	164.358	52	28.1166	23.8834
Ymf56|P.biaurelia-Sample_379	Ymf56|P.caudatum-Sample_C104	0.39808	0.113861	3.49619	213	40.4845	172.515	56	4.13687	51.8631
#Average Ks: 3.43576757714
#Average Ka: 0.332971974286
#Average KaKs: 1.25475312351