#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
rpS3|P.biaurelia-Sample_379	rpS3|P.sexaurelia-Sample_130	0.18595	3.54634	0.0524342	366	75.5568	290.443	104	56.1667	47.8333
rpS3|P.biaurelia-Sample_379	rpS3|P.tetraurelia-Sample_291	0.130034	NA	NA	372	74.6436	297.356	92	56.5	35.5
rpS3|P.biaurelia-Sample_379	rpS3|Sample_Peniche3I	0.53744	1.53375	0.35041	312	60.4933	251.507	136	39.5	96.5
rpS3|P.biaurelia-Sample_379	rpS3|P.multimicronucleatum-Sample_M04	0.483293	4.81924	0.100284	291	59.4296	231.57	127	44.5	82.5
rpS3|P.biaurelia-Sample_379	rpS3|Sample_C026	0.620344	0.366695	1.69172	309	71.2554	237.745	121	20.6667	100.333
rpS3|P.biaurelia-Sample_379	rpS3|P.octaurelia-Sample_1038	0.110478	NA	NA	372	75.0953	296.905	92	61.5	30.5
rpS3|P.biaurelia-Sample_379	rpS3|P.caudatum-Sample_C104	0.407213	1.48034	0.27508	336	67.6161	268.384	128	43.6667	84.3333
rpS3|P.biaurelia-Sample_379	rpS3|Sample_M13	0.500607	1.98238	0.252528	309	60.7671	248.233	133	42.3333	90.6667
rpS3|P.sexaurelia-Sample_130	rpS3|P.tetraurelia-Sample_291	0.183387	NA	NA	369	72.9318	296.068	105	56.8333	48.1667
rpS3|P.sexaurelia-Sample_130	rpS3|Sample_Peniche3I	0.430387	1.84706	0.233012	342	66.9242	275.076	136	45.9167	90.0833
rpS3|P.sexaurelia-Sample_130	rpS3|P.multimicronucleatum-Sample_M04	0.635555	1.98995	0.319382	369	70.1632	298.837	177	48.9167	128.083
rpS3|P.sexaurelia-Sample_130	rpS3|Sample_C026	0.398794	1.39905	0.285046	372	73.7527	298.247	139	46.75	92.25
rpS3|P.sexaurelia-Sample_130	rpS3|P.octaurelia-Sample_1038	0.198775	NA	NA	366	73.9289	292.071	115	64	51
rpS3|P.sexaurelia-Sample_130	rpS3|P.caudatum-Sample_C104	0.372409	NA	NA	411	76.8466	334.153	157	58.9167	98.0833
rpS3|P.sexaurelia-Sample_130	rpS3|Sample_M13	0.528401	1.83578	0.287835	369	68.8433	300.157	161	47.1667	113.833
rpS3|P.tetraurelia-Sample_291	rpS3|Sample_Peniche3I	0.402998	NA	NA	309	62.5583	246.442	128	51.1667	76.8333
rpS3|P.tetraurelia-Sample_291	rpS3|P.multimicronucleatum-Sample_M04	0.592381	1.32364	0.447539	297	63.0103	233.99	135	39.1667	95.8333
rpS3|P.tetraurelia-Sample_291	rpS3|Sample_C026	0.485518	0.874284	0.555332	297	61.9885	235.011	116	32	84
rpS3|P.tetraurelia-Sample_291	rpS3|P.octaurelia-Sample_1038	0.0905819	1.51176	0.0599183	375	76.1448	298.855	75	49.5	25.5
rpS3|P.tetraurelia-Sample_291	rpS3|P.caudatum-Sample_C104	0.403656	1.70784	0.236355	324	66.1154	257.885	125	44.5	80.5
rpS3|P.tetraurelia-Sample_291	rpS3|Sample_M13	0.517369	1.29251	0.400282	288	59.2389	228.761	122	36.5	85.5
rpS3|Sample_Peniche3I	rpS3|P.multimicronucleatum-Sample_M04	0.133739	0.390409	0.342561	474	82.1416	391.858	73	25	48
rpS3|Sample_Peniche3I	rpS3|Sample_C026	0.308637	0.583111	0.529293	468	82.649	385.351	131	33.5	97.5
rpS3|Sample_Peniche3I	rpS3|P.octaurelia-Sample_1038	0.375851	NA	NA	303	58.8784	244.122	120	47.8333	72.1667
rpS3|Sample_Peniche3I	rpS3|P.caudatum-Sample_C104	0.307333	0.687048	0.447325	450	78.5304	371.47	129	35.3333	93.6667
rpS3|Sample_Peniche3I	rpS3|Sample_M13	0.0545186	0.324864	0.16782	498	89.1322	408.868	45	23.5	21.5
rpS3|P.multimicronucleatum-Sample_M04	rpS3|Sample_C026	0.311782	0.512184	0.60873	462	78.8108	383.189	127	29.25	97.75
rpS3|P.multimicronucleatum-Sample_M04	rpS3|P.octaurelia-Sample_1038	0.599968	0.97673	0.614262	300	60.8894	239.111	132	33.25	98.75
rpS3|P.multimicronucleatum-Sample_M04	rpS3|P.caudatum-Sample_C104	0.274853	0.746412	0.368232	429	71.2119	357.788	116	33.6667	82.3333
rpS3|P.multimicronucleatum-Sample_M04	rpS3|Sample_M13	0.167415	0.351073	0.476866	486	85.011	400.989	84	23.8333	60.1667
rpS3|Sample_C026	rpS3|P.octaurelia-Sample_1038	0.480868	0.652219	0.737279	309	65.7992	243.201	115	28.6667	86.3333
rpS3|Sample_C026	rpS3|P.caudatum-Sample_C104	0.239061	0.586876	0.407345	1020	183.841	836.159	246	74.8333	171.167
rpS3|Sample_C026	rpS3|Sample_M13	0.350917	0.453543	0.773723	468	80.5588	387.441	136	27.4167	108.583
rpS3|P.octaurelia-Sample_1038	rpS3|P.caudatum-Sample_C104	0.385235	NA	NA	348	64.7522	283.248	136	50.6667	85.3333
rpS3|P.octaurelia-Sample_1038	rpS3|Sample_M13	0.594833	0.921247	0.645682	315	63.7866	251.213	137	33.8333	103.167
rpS3|P.caudatum-Sample_C104	rpS3|Sample_M13	0.331756	0.742285	0.446939	474	83.2913	390.709	144	39.25	104.75
#Average Ka: 0.391898946429
#Average Ks: 1.265665
#Average KaKs: 0.432614803571