#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh4|Sample_M13	nadh4|P.multimicronucleatum-Sample_M04	0.0533225	0.478645	0.111403	1599	326.441	1272.56	181	115.5	65.5
nadh4|Sample_M13	nadh4|P.tetraurelia-Sample_291	0.22372	NA	NA	1554	335.26	1218.74	515	279.25	235.75
nadh4|Sample_M13	nadh4|P.biaurelia-Sample_379	0.330567	0.497504	0.664451	1338	283.466	1054.53	385	103.083	281.917
nadh4|Sample_M13	nadh4|P.caudatum-Sample_C104	0.222697	0.228575	0.974283	1302	260.537	1041.46	252	51.3333	200.667
nadh4|Sample_M13	nadh4|Sample_C026	0.233802	0.196966	1.18702	1407	239.573	1167.43	276	41.5	234.5
nadh4|Sample_M13	nadh4|P.sexaurelia-Sample_130	0.342478	0.469426	0.729566	1332	280.87	1051.13	387	98	289
nadh4|Sample_M13	nadh4|P.octaurelia-Sample_1038	0.172782	NA	NA	1545	327.325	1217.68	448	260.083	187.917
nadh4|Sample_M13	nadh4|Sample_Peniche3I	0.0107402	0.336864	0.0318828	1536	316.906	1219.09	99	86	13
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.tetraurelia-Sample_291	0.430057	0.395843	1.08643	1359	293.971	1065.03	439	90.4167	348.583
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.biaurelia-Sample_379	0.159855	NA	NA	1536	326.819	1209.18	436	261.917	174.083
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.caudatum-Sample_C104	0.234502	0.15946	1.4706	1398	234.369	1163.63	268	33.6667	234.333
nadh4|P.multimicronucleatum-Sample_M04	nadh4|Sample_C026	0.151307	0.667797	0.226576	1518	311.372	1206.63	303	137.667	165.333
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.sexaurelia-Sample_130	0.169106	NA	NA	1536	324.507	1211.49	436	252.583	183.417
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.octaurelia-Sample_1038	0.1672	NA	NA	1545	326.752	1218.25	445	262.417	182.583
nadh4|P.multimicronucleatum-Sample_M04	nadh4|Sample_Peniche3I	0.050735	0.542601	0.0935034	1536	316.33	1219.67	182	122.167	59.8333
nadh4|P.tetraurelia-Sample_291	nadh4|P.biaurelia-Sample_379	0.149473	2.58967	0.0577189	1548	344	1204	413	249.833	163.167
nadh4|P.tetraurelia-Sample_291	nadh4|P.caudatum-Sample_C104	0.411397	0.416556	0.987616	1311	293.055	1017.94	416	93.6667	322.333
nadh4|P.tetraurelia-Sample_291	nadh4|Sample_C026	0.200893	NA	NA	1521	326.586	1194.41	477	266.5	210.5
nadh4|P.tetraurelia-Sample_291	nadh4|P.sexaurelia-Sample_130	0.155943	NA	NA	1548	342.374	1205.63	442	272.25	169.75
nadh4|P.tetraurelia-Sample_291	nadh4|P.octaurelia-Sample_1038	0.131193	1.61023	0.0814746	1548	342.582	1205.42	372	226.917	145.083
nadh4|P.tetraurelia-Sample_291	nadh4|Sample_Peniche3I	0.237637	NA	NA	1530	328.708	1201.29	511	266.333	244.667
nadh4|P.biaurelia-Sample_379	nadh4|P.caudatum-Sample_C104	0.141954	NA	NA	1533	325.481	1207.52	407	250.833	156.167
nadh4|P.biaurelia-Sample_379	nadh4|Sample_C026	0.376251	0.227398	1.65459	1428	275.711	1152.29	395	54.0833	340.917
nadh4|P.biaurelia-Sample_379	nadh4|P.sexaurelia-Sample_130	0.0762012	NA	NA	1551	338.802	1212.2	351	263.167	87.8333
nadh4|P.biaurelia-Sample_379	nadh4|P.octaurelia-Sample_1038	0.0520988	1.73192	0.0300815	1551	339.01	1211.99	290	229	61
nadh4|P.biaurelia-Sample_379	nadh4|Sample_Peniche3I	0.327699	0.468573	0.699356	1335	284.108	1050.89	378	99	279
nadh4|P.caudatum-Sample_C104	nadh4|Sample_C026	0.0161249	0.571887	0.028196	1536	313.647	1222.35	145	125.5	19.5
nadh4|P.caudatum-Sample_C104	nadh4|P.sexaurelia-Sample_130	0.338343	0.286989	1.17894	1332	287.257	1044.74	353	68.5	284.5
nadh4|P.caudatum-Sample_C104	nadh4|P.octaurelia-Sample_1038	0.382979	0.139766	2.74013	1407	272.515	1134.49	375	34.75	340.25
nadh4|P.caudatum-Sample_C104	nadh4|Sample_Peniche3I	0.230909	0.238494	0.968196	1311	260.247	1050.75	262	53.1667	208.833
nadh4|Sample_C026	nadh4|P.sexaurelia-Sample_130	0.130701	NA	NA	1536	324.346	1211.65	397	251.667	145.333
nadh4|Sample_C026	nadh4|P.octaurelia-Sample_1038	0.396674	0.133926	2.96189	1404	272.456	1131.54	382	33.4167	348.583
nadh4|Sample_C026	nadh4|Sample_Peniche3I	0.243898	0.182512	1.33634	1422	239.709	1182.29	285	38.8333	246.167
nadh4|P.sexaurelia-Sample_130	nadh4|P.octaurelia-Sample_1038	0.0785432	NA	NA	1551	337.381	1213.62	365	274.5	90.5
nadh4|P.sexaurelia-Sample_130	nadh4|Sample_Peniche3I	0.414303	0.192962	2.14707	1395	270.369	1124.63	404	46	358
nadh4|P.octaurelia-Sample_1038	nadh4|Sample_Peniche3I	0.16115	NA	NA	1527	324.234	1202.77	424	249.583	174.417
#Average Ka: 0.240502191304
#Average Ks: 0.554981043478
#Average KaKs: 0.932491921739