#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh2|P.sexaurelia-Sample_130	nadh2|P.biaurelia-Sample_379	0.0722786	NA	NA	486	98.9937	387.006	107	80.3333	26.6667
nadh2|P.sexaurelia-Sample_130	nadh2|P.tetraurelia-Sample_291	0.09679	NA	NA	495	102.215	392.785	119	83.3333	35.6667
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_M13	0.609907	0.283256	2.1532	453	88.6637	364.336	173	20.9167	152.083
nadh2|P.sexaurelia-Sample_130	nadh2|P.multimicronucleatum-Sample_M04	0.552738	0.249092	2.21901	390	75.4893	314.511	139	16	123
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_C026	0.227567	2.71881	0.0837012	498	99.7697	398.23	151	72.8333	78.1667
nadh2|P.sexaurelia-Sample_130	nadh2|P.caudatum-Sample_C104	0.236402	NA	NA	501	100.709	400.291	159	77.8333	81.1667
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_Peniche3I	0.284124	NA	NA	498	94.2025	403.798	194	98.5	95.5
nadh2|P.sexaurelia-Sample_130	nadh2|P.octaurelia-Sample_1038	0.0686964	2.7444	0.0250315	519	105.152	413.848	104	76.8333	27.1667
nadh2|P.biaurelia-Sample_379	nadh2|P.tetraurelia-Sample_291	0.0722757	NA	NA	486	101.398	384.602	103	76.5	26.5
nadh2|P.biaurelia-Sample_379	nadh2|Sample_M13	0.241905	NA	NA	483	92.8716	390.128	161	80.3333	80.6667
nadh2|P.biaurelia-Sample_379	nadh2|P.multimicronucleatum-Sample_M04	0.310947	NA	NA	447	88.5165	358.483	164	72.75	91.25
nadh2|P.biaurelia-Sample_379	nadh2|Sample_C026	0.169616	NA	NA	483	93.2432	389.757	144	84.8333	59.1667
nadh2|P.biaurelia-Sample_379	nadh2|P.caudatum-Sample_C104	0.367405	0.450003	0.81645	423	86.1918	336.808	127	29.1667	97.8333
nadh2|P.biaurelia-Sample_379	nadh2|Sample_Peniche3I	0.259488	NA	NA	480	92.5035	387.496	162	77	85
nadh2|P.biaurelia-Sample_379	nadh2|P.octaurelia-Sample_1038	0.0465345	1.86656	0.0249306	486	98.1476	387.852	85	67.5	17.5
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_M13	0.267943	NA	NA	489	95.4601	393.54	178	89.3333	88.6667
nadh2|P.tetraurelia-Sample_291	nadh2|P.multimicronucleatum-Sample_M04	0.286185	NA	NA	426	85.5401	340.46	156	75	81
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_C026	0.390817	0.43861	0.891036	432	87.827	344.173	134	29.1667	104.833
nadh2|P.tetraurelia-Sample_291	nadh2|P.caudatum-Sample_C104	0.39558	0.523009	0.756354	435	90.731	344.269	140	34.1667	105.833
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_Peniche3I	0.288241	NA	NA	495	97.3381	397.662	184	88.8333	95.1667
nadh2|P.tetraurelia-Sample_291	nadh2|P.octaurelia-Sample_1038	0.0469154	1.35097	0.0347271	498	102.206	395.794	82	64	18
nadh2|Sample_M13	nadh2|P.multimicronucleatum-Sample_M04	0.152889	0.264085	0.578938	462	84.232	377.768	71	18.75	52.25
nadh2|Sample_M13	nadh2|Sample_C026	0.2607	0.152819	1.70594	417	71.1242	345.876	86	9.83333	76.1667
nadh2|Sample_M13	nadh2|P.caudatum-Sample_C104	0.255842	0.14793	1.72948	420	73.2439	346.756	85	9.83333	75.1667
nadh2|Sample_M13	nadh2|Sample_Peniche3I	0.0483031	0.275817	0.175127	510	93.16	416.84	41	21.5	19.5
nadh2|Sample_M13	nadh2|P.octaurelia-Sample_1038	0.447314	0.375169	1.1923	441	85.8162	355.184	145	25.3333	119.667
nadh2|P.multimicronucleatum-Sample_M04	nadh2|Sample_C026	0.219195	0.581023	0.377257	441	80.1663	360.834	101	32.4167	68.5833
nadh2|P.multimicronucleatum-Sample_M04	nadh2|P.caudatum-Sample_C104	0.203074	0.496783	0.408777	444	80.9747	363.025	94	29.4167	64.5833
nadh2|P.multimicronucleatum-Sample_M04	nadh2|Sample_Peniche3I	0.169412	0.37158	0.455924	462	84.4644	377.536	82	24.75	57.25
nadh2|P.multimicronucleatum-Sample_M04	nadh2|P.octaurelia-Sample_1038	0.401303	0.498097	0.805673	402	76.4739	325.526	129	27.8333	101.167
nadh2|Sample_C026	nadh2|P.caudatum-Sample_C104	0.0304127	0.29232	0.104039	573	103.269	469.731	39	25	14
nadh2|Sample_C026	nadh2|Sample_Peniche3I	0.193994	0.498886	0.388855	489	84.8509	404.149	100	30.9167	69.0833
nadh2|Sample_C026	nadh2|P.octaurelia-Sample_1038	0.168669	3.18336	0.0529845	573	109.572	463.428	151	81	70
nadh2|P.caudatum-Sample_C104	nadh2|Sample_Peniche3I	0.203617	0.396736	0.513231	492	86.8235	405.176	99	26.75	72.25
nadh2|P.caudatum-Sample_C104	nadh2|P.octaurelia-Sample_1038	0.176718	NA	NA	573	109.337	463.663	159	86	73
nadh2|Sample_Peniche3I	nadh2|P.octaurelia-Sample_1038	0.231144	1.19878	0.192817	474	86.9085	387.091	129	52	77
#Average Ka: 0.247479526087
#Average Ks: 0.841656304348
#Average KaKs: 0.68199056087