#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.sexaurelia-Sample_130	0.0279313	1.97225	0.0141622	189	43.1082	145.892	34	30	4
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.multimicronucleatum-Sample_M04	0.145955	NA	NA	183	39.7458	143.254	55	36	19
nadh1_b|P.biaurelia-Sample_379	nadh1_b|Sample_C026	0.128731	NA	NA	192	41.2394	150.761	50	32.1667	17.8333
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.caudatum-Sample_C104	0.12281	NA	NA	189	40.4034	148.597	52	35.1667	16.8333
nadh1_b|P.biaurelia-Sample_379	nadh1_b|Sample_Peniche3I	0.152453	NA	NA	189	40.4034	148.597	53	32.5	20.5
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.tetraurelia-Sample_291	0.0417591	NA	NA	192	44.2817	147.718	41	35	6
nadh1_b|P.biaurelia-Sample_379	nadh1_b|Sample_M13	0.144433	NA	NA	189	40.5725	148.428	56	36.5	19.5
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.octaurelia-Sample_1038	0.0569432	3.43586	0.0165732	189	43.1082	145.892	40	32	8
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.multimicronucleatum-Sample_M04	0.144217	NA	NA	180	40.2632	139.737	64	45.6667	18.3333
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|Sample_C026	0.131762	NA	NA	189	41.4177	147.582	60	42.1667	17.8333
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.caudatum-Sample_C104	0.123574	NA	NA	189	41.2487	147.751	62	45.1667	16.8333
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|Sample_Peniche3I	0.156194	NA	NA	189	41.2487	147.751	65	44.1667	20.8333
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.tetraurelia-Sample_291	0.0281976	NA	NA	189	44.4606	144.539	38	34	4
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|Sample_M13	0.148093	NA	NA	189	41.4177	147.582	64	44.1667	19.8333
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.octaurelia-Sample_1038	0.035289	1.41976	0.0248556	189	43.9535	145.047	33	28	5
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|Sample_C026	0.0572601	0.285665	0.200445	183	37.8854	145.115	17	9	8
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|P.caudatum-Sample_C104	0.0646563	0.461545	0.140087	183	37.7163	145.284	22	13	9
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|Sample_Peniche3I	0.0212854	0.863491	0.0246504	180	37.0489	142.951	22	19	3
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|P.tetraurelia-Sample_291	0.159459	NA	NA	180	40.7707	139.229	63	43	20
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|Sample_M13	0.0141568	0.634034	0.0223281	180	37.3872	142.613	18	16	2
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|P.octaurelia-Sample_1038	0.15489	NA	NA	183	40.0841	142.916	62	42	20
nadh1_b|Sample_C026	nadh1_b|P.caudatum-Sample_C104	0.00668362	0.39993	0.016712	189	38.7129	150.287	13	12	1
nadh1_b|Sample_C026	nadh1_b|Sample_Peniche3I	0.0894065	0.748592	0.119433	189	38.7129	150.287	31	18.3333	12.6667
nadh1_b|Sample_C026	nadh1_b|P.tetraurelia-Sample_291	0.135328	NA	NA	192	42.5915	149.408	59	40.5	18.5
nadh1_b|Sample_C026	nadh1_b|Sample_M13	0.07465	0.559608	0.133397	189	38.8819	150.118	26	15.3333	10.6667
nadh1_b|Sample_C026	nadh1_b|P.octaurelia-Sample_1038	0.139883	NA	NA	189	41.4177	147.582	58	39.1667	18.8333
nadh1_b|P.caudatum-Sample_C104	nadh1_b|Sample_Peniche3I	0.0968243	0.911488	0.106227	189	38.5438	150.456	34	20.3333	13.6667
nadh1_b|P.caudatum-Sample_C104	nadh1_b|P.tetraurelia-Sample_291	0.129397	NA	NA	189	41.7558	147.244	61	43.5	17.5
nadh1_b|P.caudatum-Sample_C104	nadh1_b|Sample_M13	0.0819474	0.563248	0.145491	189	38.7129	150.287	27	15.3333	11.6667
nadh1_b|P.caudatum-Sample_C104	nadh1_b|P.octaurelia-Sample_1038	0.131597	NA	NA	189	41.2487	147.751	61	43.1667	17.8333
nadh1_b|Sample_Peniche3I	nadh1_b|P.tetraurelia-Sample_291	0.162394	NA	NA	189	41.7558	147.244	68	46.5	21.5
nadh1_b|Sample_Peniche3I	nadh1_b|Sample_M13	0.00668362	0.241739	0.0276481	189	38.7129	150.287	9	8	1
nadh1_b|Sample_Peniche3I	nadh1_b|P.octaurelia-Sample_1038	0.165982	NA	NA	189	41.2487	147.751	66	44	22
nadh1_b|P.tetraurelia-Sample_291	nadh1_b|Sample_M13	0.154204	NA	NA	189	41.9249	147.075	67	46.5	20.5
nadh1_b|P.tetraurelia-Sample_291	nadh1_b|P.octaurelia-Sample_1038	0.0210482	0.745224	0.0282441	189	44.4606	144.539	24	21	3
nadh1_b|Sample_M13	nadh1_b|P.octaurelia-Sample_1038	0.157786	NA	NA	189	41.4177	147.582	69	48	21
#Average Ka: 0.0467689814286
#Average Ks: 0.945888142857
#Average KaKs: 0.0728752642857