#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
atp9|Sample_Peniche3I	atp9|Sample_C026	0.0296413	0.605353	0.0489653	225	52.961	172.039	27	22	5
atp9|Sample_Peniche3I	atp9|P.tetraurelia-Sample_291	0.0311855	3.84029	0.0081206	216	52.3125	163.688	44	39	5
atp9|Sample_Peniche3I	atp9|P.sexaurelia-Sample_130	0.0360019	1.79241	0.0200857	225	54.3103	170.69	43	37	6
atp9|Sample_Peniche3I	atp9|P.multimicronucleatum-Sample_M04	NA	0.145398	-0	225	52.961	172.039	7	7	NA
atp9|Sample_Peniche3I	atp9|P.octaurelia-Sample_1038	0.0248438	1.17093	0.0212172	216	52.3125	163.688	35	31	4
atp9|Sample_Peniche3I	atp9|P.caudatum-Sample_C104	0.0296117	0.454692	0.0651246	225	52.7924	172.208	23	18	5
atp9|Sample_Peniche3I	atp9|P.biaurelia-Sample_379	0.0298202	1.49981	0.0198827	225	53.973	171.027	40	35	5
atp9|Sample_Peniche3I	atp9|Sample_M13	NA	0.0588988	-0	225	52.961	172.039	3	3	NA
atp9|Sample_C026	atp9|P.tetraurelia-Sample_291	0.00612788	1.52666	0.0040139	216	52.1437	163.856	35	34	1
atp9|Sample_C026	atp9|P.sexaurelia-Sample_130	0.191991	0.0225649	8.50837	228	44.9865	183.013	32	1	31
atp9|Sample_C026	atp9|P.multimicronucleatum-Sample_M04	0.0466509	0.717562	0.065013	231	54.1248	176.875	33	25	8
atp9|Sample_C026	atp9|P.octaurelia-Sample_1038	0.00612788	1.18012	0.00519258	216	52.1437	163.856	32	31	1
atp9|Sample_C026	atp9|P.caudatum-Sample_C104	0.0171393	0.142445	0.120323	231	53.9562	177.044	10	7	3
atp9|Sample_C026	atp9|P.biaurelia-Sample_379	0.0435272	1.25375	0.0347175	234	56.6455	177.354	42	34.5	7.5
atp9|Sample_C026	atp9|Sample_M13	0.0296413	0.564181	0.0525386	225	52.961	172.039	26	21	5
atp9|P.tetraurelia-Sample_291	atp9|P.sexaurelia-Sample_130	0.00617899	0.2937	0.0210385	216	53.4937	162.506	14	13	1
atp9|P.tetraurelia-Sample_291	atp9|P.multimicronucleatum-Sample_M04	0.0311855	NA	NA	216	52.3125	163.688	45	40	5
atp9|P.tetraurelia-Sample_291	atp9|P.octaurelia-Sample_1038	NA	0.241232	-0	216	53.325	162.675	11	11	NA
atp9|P.tetraurelia-Sample_291	atp9|P.caudatum-Sample_C104	0.00612788	1.8993	0.00322638	216	52.1437	163.856	37	36	1
atp9|P.tetraurelia-Sample_291	atp9|P.biaurelia-Sample_379	0.00616613	0.295986	0.0208325	216	53.1562	162.844	14	13	1
atp9|P.tetraurelia-Sample_291	atp9|Sample_M13	0.0311855	2.59424	0.012021	216	52.3125	163.688	43	38	5
atp9|P.sexaurelia-Sample_130	atp9|P.multimicronucleatum-Sample_M04	0.0687386	1.78501	0.0385087	240	57.3034	182.697	51	39	12
atp9|P.sexaurelia-Sample_130	atp9|P.octaurelia-Sample_1038	0.00617899	0.266543	0.023182	216	53.4937	162.506	13	12	1
atp9|P.sexaurelia-Sample_130	atp9|P.caudatum-Sample_C104	0.020486	1.37115	0.0149407	228	54.8077	173.192	38	34.5	3.5
atp9|P.sexaurelia-Sample_130	atp9|P.biaurelia-Sample_379	0.00578021	0.377369	0.0153171	231	57.3285	173.672	18	17	1
atp9|P.sexaurelia-Sample_130	atp9|Sample_M13	0.0360019	1.61439	0.0223006	225	54.3103	170.69	42	36	6
atp9|P.multimicronucleatum-Sample_M04	atp9|P.octaurelia-Sample_1038	0.0248438	1.51073	0.0164449	216	52.3125	163.688	38	34	4
atp9|P.multimicronucleatum-Sample_M04	atp9|P.caudatum-Sample_C104	0.034612	0.515876	0.0670937	231	53.619	177.381	26	20	6
atp9|P.multimicronucleatum-Sample_M04	atp9|P.biaurelia-Sample_379	0.0554101	1.84342	0.0300584	234	56.1398	177.86	48	38.5	9.5
atp9|P.multimicronucleatum-Sample_M04	atp9|Sample_M13	NA	0.217521	-0	225	52.961	172.039	10	10	NA
atp9|P.octaurelia-Sample_1038	atp9|P.caudatum-Sample_C104	0.00612788	1.39257	0.00440042	216	52.1437	163.856	34	33	1
atp9|P.octaurelia-Sample_1038	atp9|P.biaurelia-Sample_379	NA	0.242136	-0	216	53.1562	162.844	11	11	NA
atp9|P.octaurelia-Sample_1038	atp9|Sample_M13	0.0248438	0.937931	0.0264878	216	52.3125	163.688	32	28	4
atp9|P.caudatum-Sample_C104	atp9|P.biaurelia-Sample_379	0.0230969	1.53344	0.0150621	231	55.1365	175.864	40	36	4
atp9|P.caudatum-Sample_C104	atp9|Sample_M13	0.0296117	0.490254	0.0604007	225	52.7924	172.208	24	19	5
atp9|P.biaurelia-Sample_379	atp9|Sample_M13	0.0298202	1.17234	0.0254365	225	53.973	171.027	37	32	5
#Average Ka: 0.0312506813333
#Average Ks: 1.15550056333
#Average KaKs: 0.313010556