#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_C026	0.441378	0.701665	0.629043	162	32.3661	129.634	58	14.75	43.25
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_Peniche3I	0.489312	0.324	1.51022	153	31.041	121.959	52	8.16667	43.8333
Ymf78|P.biaurelia-Sample_379	Ymf78|P.sexaurelia-Sample_130	0.0323424	5.06274	0.00638832	198	40.0469	157.953	35	30	5
Ymf78|P.biaurelia-Sample_379	Ymf78|P.multimicronucleatum-Sample_M04	0.423881	0.506127	0.837498	183	39.3947	143.605	61	14.5	46.5
Ymf78|P.biaurelia-Sample_379	Ymf78|P.octaurelia-Sample_1038	0.0610683	2.56322	0.0238249	216	45.4917	170.508	43	33	10
Ymf78|P.biaurelia-Sample_379	Ymf78|P.tetraurelia-Sample_291	0.265021	0.124488	2.1289	198	47.9492	150.051	39	5.5	33.5
Ymf78|P.biaurelia-Sample_379	Ymf78|P.caudatum-Sample_C104	0.433768	0.720165	0.602318	174	35.1053	138.895	62	16.25	45.75
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_M13	0.426032	0.610181	0.698206	186	38.3191	147.681	64	16	48
Ymf78|Sample_C026	Ymf78|Sample_Peniche3I	0.372488	0.638	0.583837	183	31.4208	151.579	58	13.5	44.5
Ymf78|Sample_C026	Ymf78|P.sexaurelia-Sample_130	0.389646	NA	NA	195	35.4074	159.593	81	32.5	48.5
Ymf78|Sample_C026	Ymf78|P.multimicronucleatum-Sample_M04	0.349483	1.12764	0.309924	177	28.1473	148.853	58	16.4167	41.5833
Ymf78|Sample_C026	Ymf78|P.octaurelia-Sample_1038	0.458765	0.699227	0.656104	159	30.7851	128.215	58	14	44
Ymf78|Sample_C026	Ymf78|P.tetraurelia-Sample_291	0.415561	0.488813	0.850143	156	30.6278	125.372	51	11	40
Ymf78|Sample_C026	Ymf78|P.caudatum-Sample_C104	0.0481224	0.693245	0.0694161	207	35.3668	171.633	24	16	8
Ymf78|Sample_C026	Ymf78|Sample_M13	0.342297	1.00338	0.341144	189	32.5385	156.462	61	18	43
Ymf78|Sample_Peniche3I	Ymf78|P.sexaurelia-Sample_130	0.495374	0.40673	1.21794	153	30.26	122.74	54	9.5	44.5
Ymf78|Sample_Peniche3I	Ymf78|P.multimicronucleatum-Sample_M04	0.249811	0.504196	0.495465	189	31.3279	157.672	45	11.5	33.5
Ymf78|Sample_Peniche3I	Ymf78|P.octaurelia-Sample_1038	0.395824	NA	NA	183	35.0607	147.939	78	32.5	45.5
Ymf78|Sample_Peniche3I	Ymf78|P.tetraurelia-Sample_291	0.578052	0.24889	2.32252	156	30.6885	125.311	57	6.5	50.5
Ymf78|Sample_Peniche3I	Ymf78|P.caudatum-Sample_C104	0.390951	0.580533	0.673436	180	31.7546	148.245	58	12.8333	45.1667
Ymf78|Sample_Peniche3I	Ymf78|Sample_M13	0.127722	0.441387	0.289366	189	31.4713	157.529	29	10.5	18.5
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.multimicronucleatum-Sample_M04	0.431442	NA	NA	195	35.4859	159.514	86	33.6667	52.3333
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.octaurelia-Sample_1038	0.0523095	NA	NA	198	39.6687	158.331	40	32	8
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.tetraurelia-Sample_291	0.0729394	NA	NA	198	39.7376	158.262	41	30	11
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.caudatum-Sample_C104	0.472591	NA	NA	195	37.6528	157.347	86	30.8333	55.1667
Ymf78|P.sexaurelia-Sample_130	Ymf78|Sample_M13	0.28105	1.40865	0.199517	168	31.4786	136.521	52	20	32
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.octaurelia-Sample_1038	0.615351	0.409593	1.50235	189	41.7185	147.282	75	13.1667	61.8333
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.tetraurelia-Sample_291	0.40668	1.33348	0.304978	210	39.0418	170.958	78	24.3333	53.6667
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.caudatum-Sample_C104	0.333275	0.707101	0.471326	180	29.4857	150.514	54	13.5	40.5
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|Sample_M13	0.202355	0.619606	0.326586	216	35.5704	180.43	47	15	32
Ymf78|P.octaurelia-Sample_1038	Ymf78|P.tetraurelia-Sample_291	0.184582	0.104606	1.76454	204	51.2092	152.791	30	5	25
Ymf78|P.octaurelia-Sample_1038	Ymf78|P.caudatum-Sample_C104	0.582181	0.336056	1.73239	189	41.2271	147.773	71	11.1667	59.8333
Ymf78|P.octaurelia-Sample_1038	Ymf78|Sample_M13	0.370894	NA	NA	216	40.5642	175.436	89	37.6667	51.3333
Ymf78|P.tetraurelia-Sample_291	Ymf78|P.caudatum-Sample_C104	0.449633	0.799923	0.562095	174	33.5463	140.454	64	16.5	47.5
Ymf78|P.tetraurelia-Sample_291	Ymf78|Sample_M13	0.276266	2.77967	0.0993882	198	36.4512	161.549	64	26.6667	37.3333
Ymf78|P.caudatum-Sample_C104	Ymf78|Sample_M13	0.342346	0.47617	0.718958	201	35.4604	165.54	58	12.5	45.5
#Average Ka: 0.3474189
#Average Ks: 0.91101662069
#Average KaKs: 0.756131776552