#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf65|Sample_C026	Ymf65|P.caudatum-Sample_C104	0.0381895	0.506871	0.0753435	417	67.852	349.148	38	25	13
Ymf65|Sample_C026	Ymf65|Sample_M13	0.290243	0.239625	1.21124	1005	165.354	839.646	236	33.9167	202.083
Ymf65|Sample_C026	Ymf65|Sample_Peniche3I	0.212344	0.725317	0.29276	1095	198.268	896.732	258	92.1667	165.833
Ymf65|Sample_C026	Ymf65|P.octaurelia-Sample_1038	0.23166	NA	NA	1101	214.14	886.86	404	227.25	176.75
Ymf65|Sample_C026	Ymf65|P.biaurelia-Sample_379	0.236297	NA	NA	1095	211.068	883.932	427	247.833	179.167
Ymf65|Sample_C026	Ymf65|P.multimicronucleatum-Sample_M04	0.292596	0.296492	0.986861	993	160.948	832.052	241	39.4167	201.583
Ymf65|Sample_C026	Ymf65|P.sexaurelia-Sample_130	0.216468	NA	NA	1095	210.387	884.613	395	228.667	166.333
Ymf65|P.caudatum-Sample_C104	Ymf65|Sample_M13	0.193304	0.501107	0.385753	375	62.0146	312.985	76	22.6667	53.3333
Ymf65|P.caudatum-Sample_C104	Ymf65|Sample_Peniche3I	0.224514	0.291354	0.770587	381	64.8909	316.109	77	15.6667	61.3333
Ymf65|P.caudatum-Sample_C104	Ymf65|P.octaurelia-Sample_1038	0.256001	NA	NA	396	68.2523	327.748	139	67.9167	71.0833
Ymf65|P.caudatum-Sample_C104	Ymf65|P.biaurelia-Sample_379	0.256063	1.58402	0.161654	348	62.1914	285.809	103	41	62
Ymf65|P.caudatum-Sample_C104	Ymf65|P.multimicronucleatum-Sample_M04	0.281905	0.776832	0.362891	381	62.183	318.817	105	30.0833	74.9167
Ymf65|P.caudatum-Sample_C104	Ymf65|P.sexaurelia-Sample_130	0.245219	NA	NA	375	65.8345	309.166	124	59.3333	64.6667
Ymf65|Sample_M13	Ymf65|Sample_Peniche3I	0.0408262	0.358925	0.113746	1095	201.58	893.42	93	57.5	35.5
Ymf65|Sample_M13	Ymf65|P.octaurelia-Sample_1038	0.371777	NA	NA	1047	208.103	838.897	418	172.083	245.917
Ymf65|Sample_M13	Ymf65|P.biaurelia-Sample_379	0.581167	0.532683	1.09102	969	212.181	756.819	387	80.9167	306.083
Ymf65|Sample_M13	Ymf65|P.multimicronucleatum-Sample_M04	0.125344	0.493172	0.254158	1101	202.906	898.094	177	73.3333	103.667
Ymf65|Sample_M13	Ymf65|P.sexaurelia-Sample_130	0.61205	0.404136	1.51447	996	204.843	791.157	395	64	331
Ymf65|Sample_Peniche3I	Ymf65|P.octaurelia-Sample_1038	0.366784	NA	NA	1032	204.387	827.613	404	163.917	240.083
Ymf65|Sample_Peniche3I	Ymf65|P.biaurelia-Sample_379	0.568798	0.621403	0.915345	990	222.691	767.309	400	94.0833	305.917
Ymf65|Sample_Peniche3I	Ymf65|P.multimicronucleatum-Sample_M04	0.13416	0.477909	0.280722	1095	201.598	893.402	181	71.25	109.75
Ymf65|Sample_Peniche3I	Ymf65|P.sexaurelia-Sample_130	0.260185	NA	NA	1077	208.985	868.015	414	223.167	190.833
Ymf65|P.octaurelia-Sample_1038	Ymf65|P.biaurelia-Sample_379	0.0722154	1.33373	0.0541453	1095	228.352	866.648	202	142.333	59.6667
Ymf65|P.octaurelia-Sample_1038	Ymf65|P.multimicronucleatum-Sample_M04	0.299683	NA	NA	1086	215.048	870.952	443	227.833	215.167
Ymf65|P.octaurelia-Sample_1038	Ymf65|P.sexaurelia-Sample_130	0.0884099	2.50055	0.0353562	1095	227.672	867.328	237	164.667	72.3333
Ymf65|P.biaurelia-Sample_379	Ymf65|P.multimicronucleatum-Sample_M04	0.318224	NA	NA	1056	209.904	846.096	430	210.583	219.417
Ymf65|P.biaurelia-Sample_379	Ymf65|P.sexaurelia-Sample_130	0.0794169	NA	NA	1095	225.801	869.199	245	179.5	65.5
Ymf65|P.multimicronucleatum-Sample_M04	Ymf65|P.sexaurelia-Sample_130	0.535134	0.880641	0.607664	1041	226.747	814.253	429	117.5	311.5
#Average Ka: 0.267486058824
#Average Ks: 0.736751
#Average KaKs: 0.536100941176