cd /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus; java -Xmx256m -classpath /N/dc2/projects/marinovg/programs/Trimmomatic-0.33/trimmomatic-0.33.jar org.usadellab.trimmomatic.TrimmomaticPE SRR1811337_1.fastq.gz SRR1811337_2.fastq.gz SRR1811337_1.paired.fastq.gz SRR1811337_1.unpaired.fastq.gz SRR1811337_2.paired.fastq.gz SRR1811337_2.unpaired.fastq.gz ILLUMINACLIP:/N/dc2/projects/marinovg/programs/Trimmomatic-0.33/adapters/TruSeq2-PE.fa:2:30:10 &
cd /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus; java -Xmx256m -classpath /N/dc2/projects/marinovg/programs/Trimmomatic-0.33/trimmomatic-0.33.jar org.usadellab.trimmomatic.TrimmomaticPE SRR1811338_1.fastq.gz SRR1811338_2.fastq.gz SRR1811338_1.paired.fastq.gz SRR1811338_1.unpaired.fastq.gz SRR1811338_2.paired.fastq.gz SRR1811338_2.unpaired.fastq.gz ILLUMINACLIP:/N/dc2/projects/marinovg/programs/Trimmomatic-0.33/adapters/TruSeq2-PE.fa:2:30:10 &