General command line: /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/dipspades.py --pe1-1 SRR1811337_1.paired.fastq.gz --pe1-2 SRR1811337_2.paired.fastq.gz --mp1-1 SRR1811338_1.paired.fastq.gz --mp1-2 SRR1811338_2.paired.fastq.gz -t 16 -o /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus/Pseudocohnilembus_persalinus-PE+MP-dipSPAdes-3.5.0-trimmed

dipSPAdes command line: -t 16 -o /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus/Pseudocohnilembus_persalinus-PE+MP-dipSPAdes-3.5.0-trimmed/dipspades --hap /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus/Pseudocohnilembus_persalinus-PE+MP-dipSPAdes-3.5.0-trimmed/spades/contigs.fasta

dipSPAdes parameters:
	K value for dipSPAdes: 55
	Expect gaps: False
	Expect rearrangements: False
	Files with haplocontigs : ['/N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus/Pseudocohnilembus_persalinus-PE+MP-dipSPAdes-3.5.0-trimmed/spades/contigs.fasta']
	Haplotype assembly stage: False
	Output directory: /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus/Pseudocohnilembus_persalinus-PE+MP-dipSPAdes-3.5.0-trimmed/dipspades

	Dir for temp files: /N/dc2/projects/marinovg/Paramecium/others/2015-10-27-Pseudocohnilembus/Pseudocohnilembus_persalinus-PE+MP-dipSPAdes-3.5.0-trimmed/dipspades/tmp
	Threads: 16
	Memory limit (in Gb): 250