module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_tredecaurelia_209_CA2/ptredecaurelia_209_annotation_v1.0.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_tredecaurelia_209_CA2/ptredecaurelia_209_annotation_v1.0.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Ciliates/Paramecium_tredecaurelia_209_CA2/ptredecaurelia_209_annotation_v1.0.ORF.fa