SAM Tools version 0.1.18 loaded. OpenMPI libraries (GNU) version 1.6.3 loaded. GMP arithmetic library version 5.1.1 loaded. MPFR version 3.1.1 loaded. Mpc version 1.0.1 loaded. gcc version 4.9.2 loaded. R version 3.1.1 loaded Boost version 1.52.0 loaded. Sun/Oracle Java SE Development Kit version 1.7.0_51 loaded. HMMER protein sequence search and alignment tool version 3.0 loaded.