module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG1.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG1.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG10.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG10.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG100.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG100.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG101.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG101.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG102.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG102.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG103.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG103.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG104.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG104.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG105.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG105.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG106.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG106.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG107.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG107.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG108.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG108.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG109.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG109.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG11.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG11.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG110.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG110.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG111.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG111.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG112.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG112.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG113.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG113.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG114.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG114.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG115.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG115.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG116.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG116.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG117.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG117.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG118.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG118.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG119.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG119.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG12.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG12.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG120.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG120.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG121.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG121.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG122.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG122.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG123.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG123.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG124.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG124.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG125.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG125.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG126.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG126.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG127.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG127.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG128.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG128.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG129.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG129.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG13.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG13.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG130.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG130.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG131.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG131.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG132.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG132.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG133.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG133.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG134.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG134.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG135.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG135.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG136.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG136.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG137.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG137.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG138.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG138.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG139.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG139.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG14.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG14.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG140.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG140.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG141.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG141.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG142.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG142.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG143.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG143.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG144.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG144.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG145.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG145.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG146.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG146.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG147.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG147.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG148.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG148.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG149.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG149.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG15.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG15.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG150.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG150.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG151.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG151.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG152.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG152.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG153.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG153.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG154.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG154.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG155.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG155.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG156.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG156.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG157.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG157.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG158.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG158.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG159.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG159.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG16.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG16.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG160.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG160.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG161.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG161.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG162.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG162.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG163.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG163.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG164.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG164.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG165.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG165.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG166.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG166.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG167.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG167.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG168.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG168.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG169.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG169.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG17.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG17.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG170.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG170.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG171.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG171.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG172.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG172.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG173.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG173.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG174.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG174.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG175.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG175.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG176.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG176.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG177.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG177.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG178.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG178.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG179.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG179.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG18.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG18.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG180.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG180.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG181.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG181.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG182.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG182.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG183.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG183.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG184.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG184.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG185.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG185.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG186.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG186.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG187.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG187.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG188.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG188.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG189.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG189.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG19.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG19.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG190.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG190.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG191.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG191.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG192.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG192.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG193.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG193.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG194.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG194.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG195.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG195.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG196.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG196.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG197.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG197.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG198.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG198.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG199.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG199.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG2.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG2.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG20.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG20.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG200.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG200.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG201.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG201.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG202.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG202.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG203.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG203.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG204.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG204.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG205.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG205.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG206.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG206.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG207.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG207.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG208.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG208.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG209.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG209.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG21.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG21.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG210.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG210.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG211.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG211.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG212.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG212.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG213.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG213.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG214.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG214.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG215.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG215.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG216.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG216.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG217.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG217.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG218.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG218.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG219.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG219.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG22.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG22.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG220.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG220.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG221.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG221.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG222.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG222.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG223.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG223.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG224.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG224.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG225.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG225.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG226.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG226.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG227.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG227.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG228.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG228.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG229.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG229.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG23.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG23.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG230.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG230.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG231.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG231.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG232.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG232.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG233.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG233.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG234.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG234.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG235.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG235.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG236.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG236.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG237.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG237.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG238.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG238.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG239.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG239.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG24.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG24.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG240.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG240.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG241.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG241.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG242.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG242.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG243.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG243.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG244.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG244.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG245.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG245.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG246.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG246.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG247.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG247.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG248.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG248.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG249.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG249.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG25.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG25.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG250.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG250.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG251.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG251.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG252.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG252.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG253.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG253.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG254.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG254.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG255.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG255.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG256.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG256.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG257.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG257.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG258.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG258.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG259.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG259.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG26.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG26.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG260.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG260.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG261.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG261.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG262.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG262.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG263.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG263.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG264.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG264.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG265.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG265.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG266.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG266.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG267.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG267.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG268.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG268.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG269.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG269.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG27.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG27.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG270.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG270.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG271.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG271.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG272.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG272.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG273.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG273.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG274.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG274.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG275.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG275.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG276.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG276.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG277.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG277.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG278.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG278.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG279.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG279.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG28.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG28.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG280.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG280.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG281.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG281.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG282.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG282.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG283.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG283.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG284.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG284.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG285.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG285.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG286.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG286.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG287.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG287.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG288.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG288.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG289.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG289.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG29.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG29.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG290.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG290.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG291.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG291.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG292.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG292.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG293.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG293.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG294.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG294.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG295.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG295.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG296.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG296.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG297.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG297.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG298.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG298.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG299.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG299.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG3.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG3.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG30.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG30.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG300.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG300.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG301.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG301.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG302.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG302.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG303.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG303.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG304.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG304.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG305.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG305.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG306.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG306.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG307.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG307.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG308.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG308.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG309.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG309.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG31.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG31.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG310.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG310.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG311.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG311.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG312.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG312.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG313.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG313.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG314.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG314.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG315.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG315.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG316.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG316.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG317.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG317.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG318.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG318.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG319.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG319.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG32.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG32.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG320.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG320.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG321.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG321.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG322.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG322.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG323.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG323.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG324.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG324.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG325.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG325.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG326.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG326.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG327.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG327.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG328.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG328.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG329.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG329.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG33.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG33.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG330.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG330.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG331.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG331.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG332.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG332.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG333.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG333.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG334.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG334.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG335.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG335.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG336.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG336.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG337.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG337.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG338.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG338.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG339.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG339.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG34.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG34.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG340.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG340.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG341.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG341.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG342.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG342.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG343.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG343.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG344.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG344.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG345.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG345.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG346.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG346.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG347.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG347.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG348.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG348.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG349.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG349.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG35.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG35.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG350.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG350.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG351.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG351.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG352.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG352.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG353.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG353.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG354.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG354.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG355.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG355.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG356.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG356.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG357.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG357.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG358.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG358.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG359.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG359.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG36.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG36.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG360.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG360.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG361.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG361.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG362.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG362.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG363.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG363.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG364.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG364.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG365.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG365.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG366.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG366.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG367.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG367.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG368.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG368.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG369.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG369.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG37.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG37.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG370.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG370.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG371.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG371.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG372.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG372.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG373.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG373.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG374.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG374.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG375.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG375.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG376.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG376.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG377.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG377.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG378.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG378.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG379.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG379.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG38.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG38.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG380.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG380.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG381.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG381.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG382.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG382.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG383.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG383.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG384.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG384.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG385.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG385.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG386.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG386.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG387.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG387.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG388.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG388.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG389.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG389.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG39.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG39.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG390.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG390.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG391.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG391.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG392.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG392.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG393.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG393.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG394.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG394.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG395.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG395.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG396.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG396.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG397.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG397.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG398.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG398.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG399.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG399.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG4.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG4.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG40.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG40.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG400.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG400.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG401.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG401.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG402.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG402.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG403.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG403.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG404.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG404.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG405.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG405.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG406.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG406.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG407.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG407.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG408.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG408.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG409.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG409.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG41.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG41.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG410.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG410.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG411.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG411.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG412.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG412.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG413.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG413.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG414.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG414.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG415.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG415.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG416.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG416.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG417.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG417.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG418.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG418.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG419.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG419.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG42.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG42.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG420.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG420.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG421.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG421.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG422.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG422.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG423.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG423.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG424.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG424.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG425.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG425.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG426.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG426.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG427.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG427.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG428.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG428.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG429.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG429.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG43.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG43.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG430.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG430.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG431.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG431.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG432.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG432.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG433.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG433.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG434.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG434.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG44.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG44.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG45.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG45.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG46.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG46.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG47.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG47.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG48.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG48.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG49.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG49.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG5.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG5.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG50.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG50.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG51.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG51.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG52.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG52.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG53.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG53.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG54.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG54.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG55.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG55.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG56.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG56.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG57.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG57.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG58.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG58.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG59.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG59.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG6.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG6.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG60.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG60.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG61.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG61.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG62.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG62.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG63.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG63.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG64.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG64.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG65.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG65.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG66.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG66.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG67.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG67.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG68.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG68.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG69.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG69.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG7.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG7.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG70.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG70.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG71.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG71.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG72.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG72.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG73.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG73.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG74.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG74.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG75.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG75.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG76.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG76.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG77.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG77.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG78.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG78.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG79.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG79.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG8.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG8.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG80.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG80.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG81.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG81.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG82.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG82.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG83.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG83.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG84.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG84.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG85.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG85.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG86.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG86.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG87.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG87.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG88.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG88.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG89.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG89.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG9.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG9.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG90.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG90.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG91.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG91.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG92.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG92.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG93.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG93.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG94.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG94.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG95.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG95.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG96.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG96.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG97.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG97.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG98.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG98.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG99.renamed.fa -out /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG99.muscle