cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG1.muscle -n HOG1.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG10.muscle -n HOG10.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG100.muscle -n HOG100.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG101.muscle -n HOG101.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG102.muscle -n HOG102.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG103.muscle -n HOG103.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG104.muscle -n HOG104.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG105.muscle -n HOG105.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG106.muscle -n HOG106.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG107.muscle -n HOG107.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG108.muscle -n HOG108.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG109.muscle -n HOG109.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG11.muscle -n HOG11.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG110.muscle -n HOG110.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG111.muscle -n HOG111.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG112.muscle -n HOG112.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG113.muscle -n HOG113.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG114.muscle -n HOG114.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG115.muscle -n HOG115.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG116.muscle -n HOG116.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG117.muscle -n HOG117.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG118.muscle -n HOG118.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG119.muscle -n HOG119.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG12.muscle -n HOG12.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG120.muscle -n HOG120.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG121.muscle -n HOG121.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG122.muscle -n HOG122.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG123.muscle -n HOG123.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG124.muscle -n HOG124.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG125.muscle -n HOG125.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG126.muscle -n HOG126.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG127.muscle -n HOG127.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG128.muscle -n HOG128.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG129.muscle -n HOG129.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG13.muscle -n HOG13.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG130.muscle -n HOG130.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG131.muscle -n HOG131.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG132.muscle -n HOG132.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG133.muscle -n HOG133.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG134.muscle -n HOG134.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG135.muscle -n HOG135.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG136.muscle -n HOG136.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG137.muscle -n HOG137.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG138.muscle -n HOG138.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG139.muscle -n HOG139.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG14.muscle -n HOG14.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG140.muscle -n HOG140.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG141.muscle -n HOG141.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG142.muscle -n HOG142.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG143.muscle -n HOG143.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG144.muscle -n HOG144.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG145.muscle -n HOG145.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG146.muscle -n HOG146.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG147.muscle -n HOG147.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG148.muscle -n HOG148.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG149.muscle -n HOG149.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG15.muscle -n HOG15.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG150.muscle -n HOG150.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG151.muscle -n HOG151.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG152.muscle -n HOG152.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG153.muscle -n HOG153.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG154.muscle -n HOG154.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG155.muscle -n HOG155.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG156.muscle -n HOG156.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG157.muscle -n HOG157.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG158.muscle -n HOG158.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG159.muscle -n HOG159.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG16.muscle -n HOG16.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG160.muscle -n HOG160.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG161.muscle -n HOG161.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG162.muscle -n HOG162.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG163.muscle -n HOG163.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG164.muscle -n HOG164.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG165.muscle -n HOG165.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG166.muscle -n HOG166.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG167.muscle -n HOG167.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG168.muscle -n HOG168.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG169.muscle -n HOG169.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG17.muscle -n HOG17.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG170.muscle -n HOG170.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG171.muscle -n HOG171.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG172.muscle -n HOG172.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG173.muscle -n HOG173.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG174.muscle -n HOG174.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG175.muscle -n HOG175.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG176.muscle -n HOG176.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG177.muscle -n HOG177.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG178.muscle -n HOG178.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG179.muscle -n HOG179.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG18.muscle -n HOG18.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG180.muscle -n HOG180.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG181.muscle -n HOG181.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG182.muscle -n HOG182.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG183.muscle -n HOG183.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG184.muscle -n HOG184.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG185.muscle -n HOG185.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG186.muscle -n HOG186.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG187.muscle -n HOG187.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG188.muscle -n HOG188.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG189.muscle -n HOG189.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG19.muscle -n HOG19.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG190.muscle -n HOG190.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG191.muscle -n HOG191.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG192.muscle -n HOG192.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG193.muscle -n HOG193.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG194.muscle -n HOG194.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG195.muscle -n HOG195.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG196.muscle -n HOG196.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG197.muscle -n HOG197.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG198.muscle -n HOG198.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG199.muscle -n HOG199.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG2.muscle -n HOG2.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG20.muscle -n HOG20.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG200.muscle -n HOG200.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG201.muscle -n HOG201.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG202.muscle -n HOG202.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG203.muscle -n HOG203.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG204.muscle -n HOG204.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG205.muscle -n HOG205.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG206.muscle -n HOG206.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG207.muscle -n HOG207.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG208.muscle -n HOG208.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG209.muscle -n HOG209.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG21.muscle -n HOG21.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG210.muscle -n HOG210.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG211.muscle -n HOG211.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG212.muscle -n HOG212.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG213.muscle -n HOG213.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG214.muscle -n HOG214.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG215.muscle -n HOG215.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG216.muscle -n HOG216.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG217.muscle -n HOG217.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG218.muscle -n HOG218.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG219.muscle -n HOG219.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG22.muscle -n HOG22.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG220.muscle -n HOG220.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG221.muscle -n HOG221.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG222.muscle -n HOG222.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG223.muscle -n HOG223.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG224.muscle -n HOG224.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG225.muscle -n HOG225.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG226.muscle -n HOG226.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG227.muscle -n HOG227.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG228.muscle -n HOG228.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG229.muscle -n HOG229.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG23.muscle -n HOG23.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG230.muscle -n HOG230.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG231.muscle -n HOG231.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG232.muscle -n HOG232.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG233.muscle -n HOG233.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG234.muscle -n HOG234.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG235.muscle -n HOG235.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG236.muscle -n HOG236.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG237.muscle -n HOG237.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG238.muscle -n HOG238.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG239.muscle -n HOG239.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG24.muscle -n HOG24.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG240.muscle -n HOG240.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG241.muscle -n HOG241.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG242.muscle -n HOG242.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG243.muscle -n HOG243.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG244.muscle -n HOG244.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG245.muscle -n HOG245.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG246.muscle -n HOG246.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG247.muscle -n HOG247.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG248.muscle -n HOG248.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG249.muscle -n HOG249.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG25.muscle -n HOG25.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG250.muscle -n HOG250.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG251.muscle -n HOG251.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG252.muscle -n HOG252.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG253.muscle -n HOG253.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG254.muscle -n HOG254.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG255.muscle -n HOG255.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG256.muscle -n HOG256.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG257.muscle -n HOG257.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG258.muscle -n HOG258.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG259.muscle -n HOG259.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG26.muscle -n HOG26.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG260.muscle -n HOG260.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG261.muscle -n HOG261.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG262.muscle -n HOG262.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG263.muscle -n HOG263.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG264.muscle -n HOG264.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG265.muscle -n HOG265.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG266.muscle -n HOG266.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG267.muscle -n HOG267.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG268.muscle -n HOG268.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG269.muscle -n HOG269.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG27.muscle -n HOG27.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG270.muscle -n HOG270.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG271.muscle -n HOG271.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG272.muscle -n HOG272.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG273.muscle -n HOG273.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG274.muscle -n HOG274.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG275.muscle -n HOG275.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG276.muscle -n HOG276.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG277.muscle -n HOG277.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG278.muscle -n HOG278.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG279.muscle -n HOG279.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG28.muscle -n HOG28.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG280.muscle -n HOG280.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG281.muscle -n HOG281.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG282.muscle -n HOG282.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG283.muscle -n HOG283.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG284.muscle -n HOG284.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG285.muscle -n HOG285.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG286.muscle -n HOG286.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG287.muscle -n HOG287.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG288.muscle -n HOG288.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG289.muscle -n HOG289.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG29.muscle -n HOG29.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG290.muscle -n HOG290.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG291.muscle -n HOG291.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG292.muscle -n HOG292.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG293.muscle -n HOG293.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG294.muscle -n HOG294.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG295.muscle -n HOG295.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG296.muscle -n HOG296.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG297.muscle -n HOG297.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG298.muscle -n HOG298.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG299.muscle -n HOG299.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG3.muscle -n HOG3.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG30.muscle -n HOG30.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG300.muscle -n HOG300.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG301.muscle -n HOG301.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG302.muscle -n HOG302.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG303.muscle -n HOG303.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG304.muscle -n HOG304.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG305.muscle -n HOG305.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG306.muscle -n HOG306.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG307.muscle -n HOG307.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG308.muscle -n HOG308.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG309.muscle -n HOG309.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG31.muscle -n HOG31.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG310.muscle -n HOG310.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG311.muscle -n HOG311.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG312.muscle -n HOG312.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG313.muscle -n HOG313.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG314.muscle -n HOG314.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG315.muscle -n HOG315.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG316.muscle -n HOG316.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG317.muscle -n HOG317.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG318.muscle -n HOG318.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG319.muscle -n HOG319.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG32.muscle -n HOG32.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG320.muscle -n HOG320.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG321.muscle -n HOG321.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG322.muscle -n HOG322.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG323.muscle -n HOG323.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG324.muscle -n HOG324.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG325.muscle -n HOG325.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG326.muscle -n HOG326.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG327.muscle -n HOG327.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG328.muscle -n HOG328.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG329.muscle -n HOG329.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG33.muscle -n HOG33.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG330.muscle -n HOG330.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG331.muscle -n HOG331.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG332.muscle -n HOG332.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG333.muscle -n HOG333.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG334.muscle -n HOG334.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG335.muscle -n HOG335.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG336.muscle -n HOG336.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG337.muscle -n HOG337.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG338.muscle -n HOG338.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG339.muscle -n HOG339.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG34.muscle -n HOG34.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG340.muscle -n HOG340.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG341.muscle -n HOG341.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG342.muscle -n HOG342.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG343.muscle -n HOG343.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG344.muscle -n HOG344.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG345.muscle -n HOG345.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG346.muscle -n HOG346.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG347.muscle -n HOG347.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG348.muscle -n HOG348.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG349.muscle -n HOG349.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG35.muscle -n HOG35.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG350.muscle -n HOG350.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG351.muscle -n HOG351.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG352.muscle -n HOG352.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG353.muscle -n HOG353.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG354.muscle -n HOG354.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG355.muscle -n HOG355.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG356.muscle -n HOG356.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG357.muscle -n HOG357.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG358.muscle -n HOG358.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG359.muscle -n HOG359.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG36.muscle -n HOG36.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG360.muscle -n HOG360.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG361.muscle -n HOG361.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG362.muscle -n HOG362.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG363.muscle -n HOG363.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG364.muscle -n HOG364.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG365.muscle -n HOG365.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG366.muscle -n HOG366.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG367.muscle -n HOG367.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG368.muscle -n HOG368.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG369.muscle -n HOG369.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG37.muscle -n HOG37.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG370.muscle -n HOG370.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG371.muscle -n HOG371.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG372.muscle -n HOG372.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG373.muscle -n HOG373.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG374.muscle -n HOG374.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG375.muscle -n HOG375.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG376.muscle -n HOG376.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG377.muscle -n HOG377.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG378.muscle -n HOG378.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG379.muscle -n HOG379.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG38.muscle -n HOG38.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG380.muscle -n HOG380.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG381.muscle -n HOG381.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG382.muscle -n HOG382.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG383.muscle -n HOG383.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG384.muscle -n HOG384.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG385.muscle -n HOG385.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG386.muscle -n HOG386.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG387.muscle -n HOG387.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG388.muscle -n HOG388.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG389.muscle -n HOG389.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG39.muscle -n HOG39.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG390.muscle -n HOG390.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG391.muscle -n HOG391.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG392.muscle -n HOG392.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG393.muscle -n HOG393.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG394.muscle -n HOG394.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG395.muscle -n HOG395.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG396.muscle -n HOG396.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG397.muscle -n HOG397.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG398.muscle -n HOG398.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG399.muscle -n HOG399.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG4.muscle -n HOG4.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG40.muscle -n HOG40.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG400.muscle -n HOG400.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG401.muscle -n HOG401.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG402.muscle -n HOG402.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG403.muscle -n HOG403.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG404.muscle -n HOG404.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG405.muscle -n HOG405.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG406.muscle -n HOG406.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG407.muscle -n HOG407.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG408.muscle -n HOG408.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG409.muscle -n HOG409.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG41.muscle -n HOG41.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG410.muscle -n HOG410.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG411.muscle -n HOG411.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG412.muscle -n HOG412.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG413.muscle -n HOG413.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG414.muscle -n HOG414.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG415.muscle -n HOG415.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG416.muscle -n HOG416.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG417.muscle -n HOG417.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG418.muscle -n HOG418.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG419.muscle -n HOG419.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG42.muscle -n HOG42.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG420.muscle -n HOG420.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG421.muscle -n HOG421.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG422.muscle -n HOG422.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG423.muscle -n HOG423.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG424.muscle -n HOG424.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG425.muscle -n HOG425.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG426.muscle -n HOG426.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG427.muscle -n HOG427.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG428.muscle -n HOG428.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG429.muscle -n HOG429.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG43.muscle -n HOG43.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG430.muscle -n HOG430.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG431.muscle -n HOG431.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG432.muscle -n HOG432.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG433.muscle -n HOG433.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG434.muscle -n HOG434.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG44.muscle -n HOG44.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG45.muscle -n HOG45.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG46.muscle -n HOG46.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG47.muscle -n HOG47.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG48.muscle -n HOG48.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG49.muscle -n HOG49.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG5.muscle -n HOG5.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG50.muscle -n HOG50.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG51.muscle -n HOG51.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG52.muscle -n HOG52.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG53.muscle -n HOG53.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG54.muscle -n HOG54.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG55.muscle -n HOG55.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG56.muscle -n HOG56.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG57.muscle -n HOG57.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG58.muscle -n HOG58.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG59.muscle -n HOG59.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG6.muscle -n HOG6.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG60.muscle -n HOG60.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG61.muscle -n HOG61.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG62.muscle -n HOG62.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG63.muscle -n HOG63.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG64.muscle -n HOG64.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG65.muscle -n HOG65.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG66.muscle -n HOG66.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG67.muscle -n HOG67.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG68.muscle -n HOG68.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG69.muscle -n HOG69.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG7.muscle -n HOG7.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG70.muscle -n HOG70.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG71.muscle -n HOG71.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG72.muscle -n HOG72.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG73.muscle -n HOG73.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG74.muscle -n HOG74.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG75.muscle -n HOG75.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG76.muscle -n HOG76.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG77.muscle -n HOG77.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG78.muscle -n HOG78.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG79.muscle -n HOG79.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG8.muscle -n HOG8.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG80.muscle -n HOG80.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG81.muscle -n HOG81.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG82.muscle -n HOG82.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG83.muscle -n HOG83.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG84.muscle -n HOG84.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG85.muscle -n HOG85.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG86.muscle -n HOG86.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG87.muscle -n HOG87.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG88.muscle -n HOG88.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG89.muscle -n HOG89.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG9.muscle -n HOG9.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG90.muscle -n HOG90.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG91.muscle -n HOG91.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG92.muscle -n HOG92.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG93.muscle -n HOG93.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG94.muscle -n HOG94.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG95.muscle -n HOG95.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG96.muscle -n HOG96.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG97.muscle -n HOG97.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG98.muscle -n HOG98.muscle -m PROTCATGTR -T 16 -p 12345
cd /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/RAxML/; module load raxml/8.0.26; raxml -s /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/muscle/HOG99.muscle -n HOG99.muscle -m PROTCATGTR -T 16 -p 12345