export PATH=/N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/:$PATH; cd /N/dc2/projects/marinovg/2015-05-27-UTRs; /N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/cuffmerge -p 16 -o cuffmerge-2.2.0-Paramecium_biaurelia-noref Paramecium_biaurelia.assembly_list.txt
export PATH=/N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/:$PATH; cd /N/dc2/projects/marinovg/2015-05-27-UTRs; /N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/cuffmerge -p 16 -o cuffmerge-2.2.0-Paramecium_caudatum-noref Paramecium_caudatum.assembly_list.txt
export PATH=/N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/:$PATH; cd /N/dc2/projects/marinovg/2015-05-27-UTRs; /N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/cuffmerge -p 16 -o cuffmerge-2.2.0-Paramecium_primaurelia-noref Paramecium_primaurelia.assembly_list.txt
export PATH=/N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/:$PATH; cd /N/dc2/projects/marinovg/2015-05-27-UTRs; /N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/cuffmerge -p 16 -o cuffmerge-2.2.0-Paramecium_sexaurelia-noref Paramecium_sexaurelia.assembly_list.txt
export PATH=/N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/:$PATH; cd /N/dc2/projects/marinovg/2015-05-27-UTRs; /N/dc2/projects/marinovg/programs/cufflinks-2.2.0.Linux_x86_64/cuffmerge -p 16 -o cuffmerge-2.2.0-Paramecium_tetraurelia-noref Paramecium_tetraurelia.assembly_list.txt