cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; /N/dc2/projects/marinovg/programs/stringtie-1.0.3.Linux_x86_64/stringtie Paramecium_octaurelia_K8_CA1-Sample_8V-2x100-TopHat-2.0.8-minIntron10/accepted_hits.bam -o Paramecium_octaurelia_K8_CA1-Sample_8V-2x100-TopHat-2.0.8-minIntron10/stringtie-1.0.3-de-novo -p 16 -l Paramecium_octaurelia_K8_CA1-Sample_8V
cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; /N/dc2/projects/marinovg/programs/stringtie-1.0.3.Linux_x86_64/stringtie Paramecium_octaurelia_K8_CA1-Sample_8D1-2x100-TopHat-2.0.8-minIntron10/accepted_hits.bam  -o Paramecium_octaurelia_K8_CA1-Sample_8D1-2x100-TopHat-2.0.8-minIntron10/stringtie-1.0.3-de-novo -p 16 -l Paramecium_octaurelia_K8_CA1-Sample_8D1
cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; /N/dc2/projects/marinovg/programs/stringtie-1.0.3.Linux_x86_64/stringtie Paramecium_tredecaurelia_209_CA2-Sample_209_13-2x100-TopHat-2.0.8-minIntron10/accepted_hits.bam -o Paramecium_tredecaurelia_209_CA2-Sample_209_13-2x100-TopHat-2.0.8-minIntron10/stringtie-1.0.3-de-novo -p 16 -l Paramecium_tredecaurelia_209_CA2-Sample_209_13
cd /N/dc2/projects/marinovg/2015-04-23-Paramecium-stringtie; /N/dc2/projects/marinovg/programs/stringtie-1.0.3.Linux_x86_64/stringtie Paramecium_octaurelia_K8_CA1-Sample_8V+8D1-2x100-TopHat-2.0.8-minIntron10.sorted.bam -o Paramecium_octaurelia_K8_CA1-Sample_8V+8D1-2x100-TopHat-2.0.8-minIntron10/stringtie-1.0.3-de-novo -p 16 -l Paramecium_octaurelia_K8_CA1-Sample_8V+8D1